VIRsiRNAdb

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Total number of Results for NS are 16
Results from 0 - 25

siRNA sequence "ggauccucaacucacucuu" alignment with "Influenza B Virus" virus reference Genome sequences
siRNA sequence matching with "ggauccucaacucacucuu" Influenza B Virus" Virus reference Genome sequences
Browse all the records for "Influenza B Virus" virus
Browse "virsi1585 " record
Length: 19
GC Content:47 %
Starting position: 714
Strain of Virus: B/Beijing/76/98
GenBank Acc: AY687395
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggauccucaacucacucuu" siRNA in Human Genome sequences
See AY687395 at Genbank
Pubmed:16856616
Article:Rapid identification of small interfering RNA that can effectively inhibit the replication of multiple influenza B virus strains.
Authors:Gao Y, Sun L, Dong J, Xu X, Shu Y, Chen M, Yin L, Liang Z, Jin Q.
Journal:Antivir Ther. 2006;11(4):431-8.
Entrez:16856616

siRNA sequence "ggaaguaaacacucagaaa" alignment with "Influenza B Virus" virus reference Genome sequences
siRNA sequence matching with "ggaaguaaacacucagaaa" Influenza B Virus" Virus reference Genome sequences
Browse all the records for "Influenza B Virus" virus
Browse "virsi1583 " record
Length: 19
GC Content:37 %
Starting position: 484
Strain of Virus: B/Beijing/76/98
GenBank Acc: AY687395
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggaaguaaacacucagaaa" siRNA in Human Genome sequences
See AY687395 at Genbank
Pubmed:16856616
Article:Rapid identification of small interfering RNA that can effectively inhibit the replication of multiple influenza B virus strains.
Authors:Gao Y, Sun L, Dong J, Xu X, Shu Y, Chen M, Yin L, Liang Z, Jin Q.
Journal:Antivir Ther. 2006;11(4):431-8.
Entrez:16856616

siRNA sequence "ggaugaagaagauggccau" alignment with "Influenza B Virus" virus reference Genome sequences
siRNA sequence matching with "ggaugaagaagauggccau" Influenza B Virus" Virus reference Genome sequences
Browse all the records for "Influenza B Virus" virus
Browse "virsi1584 " record
Length: 19
GC Content:47 %
Starting position: 694
Strain of Virus: B/Beijing/76/98
GenBank Acc: AY687395
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggaugaagaagauggccau" siRNA in Human Genome sequences
See AY687395 at Genbank
Pubmed:16856616
Article:Rapid identification of small interfering RNA that can effectively inhibit the replication of multiple influenza B virus strains.
Authors:Gao Y, Sun L, Dong J, Xu X, Shu Y, Chen M, Yin L, Liang Z, Jin Q.
Journal:Antivir Ther. 2006;11(4):431-8.
Entrez:16856616

siRNA sequence "gagagacaauuagacuggu" alignment with "Influenza B Virus" virus reference Genome sequences
siRNA sequence matching with "gagagacaauuagacuggu" Influenza B Virus" Virus reference Genome sequences
Browse all the records for "Influenza B Virus" virus
Browse "virsi1586 " record
Length: 19
GC Content:42 %
Starting position: 835
Strain of Virus: B/Beijing/76/98
GenBank Acc: AY687395
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gagagacaauuagacuggu" siRNA in Human Genome sequences
See AY687395 at Genbank
Pubmed:16856616
Article:Rapid identification of small interfering RNA that can effectively inhibit the replication of multiple influenza B virus strains.
Authors:Gao Y, Sun L, Dong J, Xu X, Shu Y, Chen M, Yin L, Liang Z, Jin Q.
Journal:Antivir Ther. 2006;11(4):431-8.
Entrez:16856616

siRNA sequence "cggcuucgccgagaucaga" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "cggcuucgccgagaucaga" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1529 " record
Length: 19
GC Content:63 %
Starting position: 128
Strain of Virus: A/PR/8/34
GenBank Acc: EF467817
Transfection Reagent: Oligofectamine

Offtargets for "cggcuucgccgagaucaga" siRNA in Human Genome sequences
See EF467817 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "cggcuucgccgagaucaga" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "cggcuucgccgagaucaga" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1542 " record
Length: 19
GC Content:63 %
Starting position: 128
Strain of Virus: A/PR/8/34
GenBank Acc: EF467817
Transfection Reagent: Oligofectamine

Offtargets for "cggcuucgccgagaucaga" siRNA in Human Genome sequences
See EF467817 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "ggauccucaacucacucuu" alignment with "Influenza B Virus" virus reference Genome sequences
siRNA sequence matching with "ggauccucaacucacucuu" Influenza B Virus" Virus reference Genome sequences
Browse all the records for "Influenza B Virus" virus
Browse "virsi1612 " record
Length: 19
GC Content:47 %
Starting position: 714
Strain of Virus: B/Beijing/76/98
GenBank Acc: AY687395
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "ggauccucaacucacucuu" siRNA in Human Genome sequences
See AY687395 at Genbank
Pubmed:16856616
Article:Rapid identification of small interfering RNA that can effectively inhibit the replication of multiple influenza B virus strains.
Authors:Gao Y, Sun L, Dong J, Xu X, Shu Y, Chen M, Yin L, Liang Z, Jin Q.
Journal:Antivir Ther. 2006;11(4):431-8.
Entrez:16856616

siRNA sequence "ggaaguaaacacucagaaa" alignment with "Influenza B Virus" virus reference Genome sequences
siRNA sequence matching with "ggaaguaaacacucagaaa" Influenza B Virus" Virus reference Genome sequences
Browse all the records for "Influenza B Virus" virus
Browse "virsi1610 " record
Length: 19
GC Content:37 %
Starting position: 484
Strain of Virus: B/Beijing/76/98
GenBank Acc: AY687395
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "ggaaguaaacacucagaaa" siRNA in Human Genome sequences
See AY687395 at Genbank
Pubmed:16856616
Article:Rapid identification of small interfering RNA that can effectively inhibit the replication of multiple influenza B virus strains.
Authors:Gao Y, Sun L, Dong J, Xu X, Shu Y, Chen M, Yin L, Liang Z, Jin Q.
Journal:Antivir Ther. 2006;11(4):431-8.
Entrez:16856616

siRNA sequence "ggaugaagaagauggccau" alignment with "Influenza B Virus" virus reference Genome sequences
siRNA sequence matching with "ggaugaagaagauggccau" Influenza B Virus" Virus reference Genome sequences
Browse all the records for "Influenza B Virus" virus
Browse "virsi1611 " record
Length: 19
GC Content:47 %
Starting position: 694
Strain of Virus: B/Beijing/76/98
GenBank Acc: AY687395
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "ggaugaagaagauggccau" siRNA in Human Genome sequences
See AY687395 at Genbank
Pubmed:16856616
Article:Rapid identification of small interfering RNA that can effectively inhibit the replication of multiple influenza B virus strains.
Authors:Gao Y, Sun L, Dong J, Xu X, Shu Y, Chen M, Yin L, Liang Z, Jin Q.
Journal:Antivir Ther. 2006;11(4):431-8.
Entrez:16856616

siRNA sequence "gaauguuggugacccaacu" alignment with "Influenza B Virus" virus reference Genome sequences
siRNA sequence matching with "gaauguuggugacccaacu" Influenza B Virus" Virus reference Genome sequences
Browse all the records for "Influenza B Virus" virus
Browse "virsi1582 " record
Length: 19
GC Content:47 %
Starting position: 412
Strain of Virus: B/Beijing/76/98
GenBank Acc: AY687395
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gaauguuggugacccaacu" siRNA in Human Genome sequences
See AY687395 at Genbank
Pubmed:16856616
Article:Rapid identification of small interfering RNA that can effectively inhibit the replication of multiple influenza B virus strains.
Authors:Gao Y, Sun L, Dong J, Xu X, Shu Y, Chen M, Yin L, Liang Z, Jin Q.
Journal:Antivir Ther. 2006;11(4):431-8.
Entrez:16856616

siRNA sequence "ggaaucaagaauaaagacu" alignment with "Influenza B Virus" virus reference Genome sequences
siRNA sequence matching with "ggaaucaagaauaaagacu" Influenza B Virus" Virus reference Genome sequences
Browse all the records for "Influenza B Virus" virus
Browse "virsi1581 " record
Length: 19
GC Content:32 %
Starting position: 166
Strain of Virus: B/Beijing/76/98
GenBank Acc: AY687395
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggaaucaagaauaaagacu" siRNA in Human Genome sequences
See AY687395 at Genbank
Pubmed:16856616
Article:Rapid identification of small interfering RNA that can effectively inhibit the replication of multiple influenza B virus strains.
Authors:Gao Y, Sun L, Dong J, Xu X, Shu Y, Chen M, Yin L, Liang Z, Jin Q.
Journal:Antivir Ther. 2006;11(4):431-8.
Entrez:16856616

siRNA sequence "gagagacaauuagacuggu" alignment with "Influenza B Virus" virus reference Genome sequences
siRNA sequence matching with "gagagacaauuagacuggu" Influenza B Virus" Virus reference Genome sequences
Browse all the records for "Influenza B Virus" virus
Browse "virsi1613 " record
Length: 19
GC Content:42 %
Starting position: 835
Strain of Virus: B/Beijing/76/98
GenBank Acc: AY687395
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "gagagacaauuagacuggu" siRNA in Human Genome sequences
See AY687395 at Genbank
Pubmed:16856616
Article:Rapid identification of small interfering RNA that can effectively inhibit the replication of multiple influenza B virus strains.
Authors:Gao Y, Sun L, Dong J, Xu X, Shu Y, Chen M, Yin L, Liang Z, Jin Q.
Journal:Antivir Ther. 2006;11(4):431-8.
Entrez:16856616

siRNA sequence "guccuccgaugaggacucc" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "guccuccgaugaggacucc" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1530 " record
Length: 19
GC Content:63 %
Starting position: 562
Strain of Virus: A/PR/8/34
GenBank Acc: EF467817
Transfection Reagent: Oligofectamine

Offtargets for "guccuccgaugaggacucc" siRNA in Human Genome sequences
See EF467817 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "ugauaacacaguucgaguc" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "ugauaacacaguucgaguc" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1531 " record
Length: 19
GC Content:42 %
Starting position: 589
Strain of Virus: A/PR/8/34
GenBank Acc: EF467817
Transfection Reagent: Oligofectamine

Offtargets for "ugauaacacaguucgaguc" siRNA in Human Genome sequences
See EF467817 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "guccuccgaugaggacucc" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "guccuccgaugaggacucc" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1543 " record
Length: 19
GC Content:63 %
Starting position: 562
Strain of Virus: A/PR/8/34
GenBank Acc: EF467817
Transfection Reagent: Oligofectamine

Offtargets for "guccuccgaugaggacucc" siRNA in Human Genome sequences
See EF467817 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334

siRNA sequence "ugauaacacaguucgaguc" alignment with "Influenza A Virus" virus reference Genome sequences
siRNA sequence matching with "ugauaacacaguucgaguc" Influenza A Virus" Virus reference Genome sequences
Browse all the records for "Influenza A Virus" virus
Browse "virsi1544 " record
Length: 19
GC Content:42 %
Starting position: 589
Strain of Virus: A/PR/8/34
GenBank Acc: EF467817
Transfection Reagent: Oligofectamine

Offtargets for "ugauaacacaguucgaguc" siRNA in Human Genome sequences
See EF467817 at Genbank
Pubmed:12594334
Article:RNA interference of influenza virus production by directly targeting mRNA for degradation and indirectly inhibiting all viral RNA transcription.
Authors:Ge Q, McManus MT, Nguyen T, Shen CH, Sharp PA, Eisen HN, Chen J.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2718-23. Epub 2003 Feb 19.
Entrez:12594334


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1585	ggauccucaacucacucuu	Influenza B Virus	NS	MDCK	Protein	86	16856616	Blast SL	refseqs
virsi1583	ggaaguaaacacucagaaa	Influenza B Virus	NS	MDCK	Protein	80	16856616	Blast SL	refseqs
virsi1584	ggaugaagaagauggccau	Influenza B Virus	NS	MDCK	Protein	71	16856616	Blast SL	refseqs
virsi1586	gagagacaauuagacuggu	Influenza B Virus	NS	MDCK	Protein	64	16856616	Blast SL	refseqs
virsi1529	cggcuucgccgagaucaga	Influenza A Virus	NS	MDCK	Viral Load	50	12594334	Blast SL	refseqs
virsi1542	cggcuucgccgagaucaga	Influenza A Virus	NS	MDCK	Viral Load	50	12594334	Blast SL	refseqs
virsi1612	ggauccucaacucacucuu	Influenza B Virus	NS	Embryonated Chicken Egg	Protein	50	16856616	Blast SL	refseqs
virsi1610	ggaaguaaacacucagaaa	Influenza B Virus	NS	Embryonated Chicken Egg	Protein	37	16856616	Blast SL	refseqs
virsi1611	ggaugaagaagauggccau	Influenza B Virus	NS	Embryonated Chicken Egg	Protein	37	16856616	Blast SL	refseqs
virsi1582	gaauguuggugacccaacu	Influenza B Virus	NS	MDCK	Protein	30	16856616	Blast SL	refseqs
virsi1581	ggaaucaagaauaaagacu	Influenza B Virus	NS	MDCK	Protein	13	16856616	Blast SL	refseqs
virsi1613	gagagacaauuagacuggu	Influenza B Virus	NS	Embryonated Chicken Egg	Protein	13	16856616	Blast SL	refseqs
virsi1530	guccuccgaugaggacucc	Influenza A Virus	NS	MDCK	Viral Load	0	12594334	Blast SL	refseqs
virsi1531	ugauaacacaguucgaguc	Influenza A Virus	NS	MDCK	Viral Load	0	12594334	Blast SL	refseqs
virsi1543	guccuccgaugaggacucc	Influenza A Virus	NS	MDCK	Viral Load	0	12594334	Blast SL	refseqs
virsi1544	ugauaacacaguucgaguc	Influenza A Virus	NS	MDCK	Viral Load	0	12594334	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm