VIRsiRNAdb

Browse BY

• Family of Virus


• Virus Name


• Gene Name


• Pubmed Id


• VsiRNAid

Total number of Results for Hepatitis E Virus [HEV] are 13
Results from 0 - 25

siRNA sequence "uugaguauccugcucgagc" alignment with "Hepatitis E Virus [HEV]" virus reference Genome sequences
siRNA sequence matching with "uugaguauccugcucgagc" Hepatitis E Virus [HEV]" Virus reference Genome sequences
Browse all the records for "Hepatitis E Virus [HEV]" virus
Browse "virsi2186 " record
Length: 19
GC Content:53 %
Strain of Virus: 4
GenBank Acc: EF570133
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "uugaguauccugcucgagc" siRNA in Human Genome sequences
See EF570133 at Genbank
Pubmed:19963327
Article:RNA interference inhibits hepatitis E virus mRNA accumulation and protein synthesis in vitro.
Authors:Huang F, Zhou J, Yang Z, Cui L, Zhang W, Yuan C, Yang S, Zhu J, Hua X.
Journal:Vet Microbiol. 2010 May 19;142(3-4):261-7. Epub 2009 Nov 6.
Entrez:19963327

siRNA sequence "guuuacaacuggugagaca" alignment with "Hepatitis E Virus [HEV]" virus reference Genome sequences
siRNA sequence matching with "guuuacaacuggugagaca" Hepatitis E Virus [HEV]" Virus reference Genome sequences
Browse all the records for "Hepatitis E Virus [HEV]" virus
Browse "virsi2189 " record
Length: 19
GC Content:42 %
Strain of Virus: 4
GenBank Acc: AY594199
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "guuuacaacuggugagaca" siRNA in Human Genome sequences
See AY594199 at Genbank
Pubmed:19576249
Article:Effective inhibition of hepatitis E virus replication in A549 cells and piglets by RNA interference (RNAi) targeting RNA-dependent RNA polymerase.
Authors:Huang F, Hua X, Yang S, Yuan C, Zhang W.
Journal:Antiviral Res. 2009 Sep;83(3):274-81. Epub 2009 Jul 1.
Entrez:19576249

siRNA sequence "cgugaugugucucggauaa" alignment with "Hepatitis E Virus [HEV]" virus reference Genome sequences
siRNA sequence matching with "cgugaugugucucggauaa" Hepatitis E Virus [HEV]" Virus reference Genome sequences
Browse all the records for "Hepatitis E Virus [HEV]" virus
Browse "virsi2188 " record
Length: 19
GC Content:47 %
Strain of Virus: 4
GenBank Acc: AY594199
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "cgugaugugucucggauaa" siRNA in Human Genome sequences
See AY594199 at Genbank
Pubmed:19576249
Article:Effective inhibition of hepatitis E virus replication in A549 cells and piglets by RNA interference (RNAi) targeting RNA-dependent RNA polymerase.
Authors:Huang F, Hua X, Yang S, Yuan C, Zhang W.
Journal:Antiviral Res. 2009 Sep;83(3):274-81. Epub 2009 Jul 1.
Entrez:19576249

siRNA sequence "ggguuagaguguauaauca" alignment with "Hepatitis E Virus [HEV]" virus reference Genome sequences
siRNA sequence matching with "ggguuagaguguauaauca" Hepatitis E Virus [HEV]" Virus reference Genome sequences
Browse all the records for "Hepatitis E Virus [HEV]" virus
Browse "virsi2190 " record
Length: 19
GC Content:37 %
Strain of Virus: 4
GenBank Acc: AY594199
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggguuagaguguauaauca" siRNA in Human Genome sequences
See AY594199 at Genbank
Pubmed:19576249
Article:Effective inhibition of hepatitis E virus replication in A549 cells and piglets by RNA interference (RNAi) targeting RNA-dependent RNA polymerase.
Authors:Huang F, Hua X, Yang S, Yuan C, Zhang W.
Journal:Antiviral Res. 2009 Sep;83(3):274-81. Epub 2009 Jul 1.
Entrez:19576249

siRNA sequence "uccagcaguauucuaagac" alignment with "Hepatitis E Virus [HEV]" virus reference Genome sequences
siRNA sequence matching with "uccagcaguauucuaagac" Hepatitis E Virus [HEV]" Virus reference Genome sequences
Browse all the records for "Hepatitis E Virus [HEV]" virus
Browse "virsi2183 " record
Length: 19
GC Content:42 %
Strain of Virus: 4
GenBank Acc: EF570133
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "uccagcaguauucuaagac" siRNA in Human Genome sequences
See EF570133 at Genbank
Pubmed:19963327
Article:RNA interference inhibits hepatitis E virus mRNA accumulation and protein synthesis in vitro.
Authors:Huang F, Zhou J, Yang Z, Cui L, Zhang W, Yuan C, Yang S, Zhu J, Hua X.
Journal:Vet Microbiol. 2010 May 19;142(3-4):261-7. Epub 2009 Nov 6.
Entrez:19963327

siRNA sequence "uuucccugacggcugccga" alignment with "Hepatitis E Virus [HEV]" virus reference Genome sequences
siRNA sequence matching with "uuucccugacggcugccga" Hepatitis E Virus [HEV]" Virus reference Genome sequences
Browse all the records for "Hepatitis E Virus [HEV]" virus
Browse "virsi2184 " record
Length: 19
GC Content:63 %
Strain of Virus: 4
GenBank Acc: EF570133
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "uuucccugacggcugccga" siRNA in Human Genome sequences
See EF570133 at Genbank
Pubmed:19963327
Article:RNA interference inhibits hepatitis E virus mRNA accumulation and protein synthesis in vitro.
Authors:Huang F, Zhou J, Yang Z, Cui L, Zhang W, Yuan C, Yang S, Zhu J, Hua X.
Journal:Vet Microbiol. 2010 May 19;142(3-4):261-7. Epub 2009 Nov 6.
Entrez:19963327

siRNA sequence "uaauuauaauacuaccgcc" alignment with "Hepatitis E Virus [HEV]" virus reference Genome sequences
siRNA sequence matching with "uaauuauaauacuaccgcc" Hepatitis E Virus [HEV]" Virus reference Genome sequences
Browse all the records for "Hepatitis E Virus [HEV]" virus
Browse "virsi2185 " record
Length: 19
GC Content:32 %
Strain of Virus: 4
GenBank Acc: EF570133
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "uaauuauaauacuaccgcc" siRNA in Human Genome sequences
See EF570133 at Genbank
Pubmed:19963327
Article:RNA interference inhibits hepatitis E virus mRNA accumulation and protein synthesis in vitro.
Authors:Huang F, Zhou J, Yang Z, Cui L, Zhang W, Yuan C, Yang S, Zhu J, Hua X.
Journal:Vet Microbiol. 2010 May 19;142(3-4):261-7. Epub 2009 Nov 6.
Entrez:19963327

siRNA sequence "guuccgugcuauugagaaa" alignment with "Hepatitis E Virus [HEV]" virus reference Genome sequences
siRNA sequence matching with "guuccgugcuauugagaaa" Hepatitis E Virus [HEV]" Virus reference Genome sequences
Browse all the records for "Hepatitis E Virus [HEV]" virus
Browse "virsi2187 " record
Length: 19
GC Content:42 %
Strain of Virus: 4
GenBank Acc: AY594199
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "guuccgugcuauugagaaa" siRNA in Human Genome sequences
See AY594199 at Genbank
Pubmed:19576249
Article:Effective inhibition of hepatitis E virus replication in A549 cells and piglets by RNA interference (RNAi) targeting RNA-dependent RNA polymerase.
Authors:Huang F, Hua X, Yang S, Yuan C, Zhang W.
Journal:Antiviral Res. 2009 Sep;83(3):274-81. Epub 2009 Jul 1.
Entrez:19576249

siRNA sequence "cucgggaguuauaguuuau" alignment with "Hepatitis E Virus [HEV]" virus reference Genome sequences
siRNA sequence matching with "cucgggaguuauaguuuau" Hepatitis E Virus [HEV]" Virus reference Genome sequences
Browse all the records for "Hepatitis E Virus [HEV]" virus
Browse "virsi2195 " record
Length: 19
GC Content:37 %
GenBank Acc: AF076239
Transfection Reagent: Lipofectamine 2000 / FuGENE 6
Incubation Time (Hours):72

Offtargets for "cucgggaguuauaguuuau" siRNA in Human Genome sequences
See AF076239 at Genbank
Pubmed:20105445
Article:Inhibition of Hepatitis E virus replication using short hairpin RNA (shRNA).
Authors:Kumar A, Panda SK, Durgapal H, Acharya SK, Rehman S, Kar UK.
Journal:Antiviral Res. 2010 Mar;85(3):541-50. Epub 2010 Jan 25.
Entrez:20105445

siRNA sequence "ccugauuggcaugcuacag" alignment with "Hepatitis E Virus [HEV]" virus reference Genome sequences
siRNA sequence matching with "ccugauuggcaugcuacag" Hepatitis E Virus [HEV]" Virus reference Genome sequences
Browse all the records for "Hepatitis E Virus [HEV]" virus
Browse "virsi2194 " record
Length: 19
GC Content:53 %
GenBank Acc: AF076239
Transfection Reagent: Lipofectamine 2000 / FuGENE 6
Incubation Time (Hours):72

Offtargets for "ccugauuggcaugcuacag" siRNA in Human Genome sequences
See AF076239 at Genbank
Pubmed:20105445
Article:Inhibition of Hepatitis E virus replication using short hairpin RNA (shRNA).
Authors:Kumar A, Panda SK, Durgapal H, Acharya SK, Rehman S, Kar UK.
Journal:Antiviral Res. 2010 Mar;85(3):541-50. Epub 2010 Jan 25.
Entrez:20105445

siRNA sequence "gugggucaucauugacgca" alignment with "Hepatitis E Virus [HEV]" virus reference Genome sequences
siRNA sequence matching with "gugggucaucauugacgca" Hepatitis E Virus [HEV]" Virus reference Genome sequences
Browse all the records for "Hepatitis E Virus [HEV]" virus
Browse "virsi2192 " record
Length: 19
GC Content:53 %
GenBank Acc: AF076239
Transfection Reagent: Lipofectamine 2000 / FuGENE 6
Incubation Time (Hours):72

Offtargets for "gugggucaucauugacgca" siRNA in Human Genome sequences
See AF076239 at Genbank
Pubmed:20105445
Article:Inhibition of Hepatitis E virus replication using short hairpin RNA (shRNA).
Authors:Kumar A, Panda SK, Durgapal H, Acharya SK, Rehman S, Kar UK.
Journal:Antiviral Res. 2010 Mar;85(3):541-50. Epub 2010 Jan 25.
Entrez:20105445

siRNA sequence "caaguucaccacaggugag" alignment with "Hepatitis E Virus [HEV]" virus reference Genome sequences
siRNA sequence matching with "caaguucaccacaggugag" Hepatitis E Virus [HEV]" Virus reference Genome sequences
Browse all the records for "Hepatitis E Virus [HEV]" virus
Browse "virsi2193 " record
Length: 19
GC Content:53 %
GenBank Acc: AF076239
Transfection Reagent: Lipofectamine 2000 / FuGENE 6
Incubation Time (Hours):72

Offtargets for "caaguucaccacaggugag" siRNA in Human Genome sequences
See AF076239 at Genbank
Pubmed:20105445
Article:Inhibition of Hepatitis E virus replication using short hairpin RNA (shRNA).
Authors:Kumar A, Panda SK, Durgapal H, Acharya SK, Rehman S, Kar UK.
Journal:Antiviral Res. 2010 Mar;85(3):541-50. Epub 2010 Jan 25.
Entrez:20105445

siRNA sequence "acuaguguucacccaggcg" alignment with "Hepatitis E Virus [HEV]" virus reference Genome sequences
siRNA sequence matching with "acuaguguucacccaggcg" Hepatitis E Virus [HEV]" Virus reference Genome sequences
Browse all the records for "Hepatitis E Virus [HEV]" virus
Browse "virsi2191 " record
Length: 19
GC Content:58 %
GenBank Acc: AF076239
Transfection Reagent: Lipofectamine 2000 / FuGENE 6
Incubation Time (Hours):72

Offtargets for "acuaguguucacccaggcg" siRNA in Human Genome sequences
See AF076239 at Genbank
Pubmed:20105445
Article:Inhibition of Hepatitis E virus replication using short hairpin RNA (shRNA).
Authors:Kumar A, Panda SK, Durgapal H, Acharya SK, Rehman S, Kar UK.
Journal:Antiviral Res. 2010 Mar;85(3):541-50. Epub 2010 Jan 25.
Entrez:20105445


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi2186	uugaguauccugcucgagc	Hepatitis E Virus [HEV]	ORF2	A549	mRNA	Medium	19963327	Blast SL	refseqs
virsi2189	guuuacaacuggugagaca	Hepatitis E Virus [HEV]	RdRp	A549	mRNA	Medium	19576249	Blast SL	refseqs
virsi2188	cgugaugugucucggauaa	Hepatitis E Virus [HEV]	RdRp	A549	mRNA	Low	19576249	Blast SL	refseqs
virsi2190	ggguuagaguguauaauca	Hepatitis E Virus [HEV]	RdRp	A549	mRNA	Low	19576249	Blast SL	refseqs
virsi2183	uccagcaguauucuaagac	Hepatitis E Virus [HEV]	ORF2	A549	mRNA	High	19963327	Blast SL	refseqs
virsi2184	uuucccugacggcugccga	Hepatitis E Virus [HEV]	ORF2	A549	mRNA	High	19963327	Blast SL	refseqs
virsi2185	uaauuauaauacuaccgcc	Hepatitis E Virus [HEV]	ORF2	A549	mRNA	High	19963327	Blast SL	refseqs
virsi2187	guuccgugcuauugagaaa	Hepatitis E Virus [HEV]	RdRp	A549	mRNA	High	19576249	Blast SL	refseqs
virsi2195	cucgggaguuauaguuuau	Hepatitis E Virus [HEV]	3CAE	HepG2	Protein	82	20105445	Blast SL	refseqs
virsi2194	ccugauuggcaugcuacag	Hepatitis E Virus [HEV]	Replicase	HepG2	Protein	75	20105445	Blast SL	refseqs
virsi2192	gugggucaucauugacgca	Hepatitis E Virus [HEV]	Helicase	HepG2	Protein	70	20105445	Blast SL	refseqs
virsi2193	caaguucaccacaggugag	Hepatitis E Virus [HEV]	Replicase	HepG2	Protein	58	20105445	Blast SL	refseqs
virsi2191	acuaguguucacccaggcg	Hepatitis E Virus [HEV]	Helicase	HepG2	Protein	35	20105445	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm