VIRsiRNAdb

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Total number of Results for La Crosse Virus are 14
Results from 0 - 25

siRNA sequence "uuuccuggcuaguggauuu" alignment with "La Crosse Virus" virus reference Genome sequences
siRNA sequence matching with "uuuccuggcuaguggauuu" La Crosse Virus" Virus reference Genome sequences
Browse all the records for "La Crosse Virus" virus
Browse "virsi1424 " record
Length: 19
GC Content:42 %
GenBank Acc: NC_004110
Transfection Reagent: siPORT
Incubation Time (Hours):48

Offtargets for "uuuccuggcuaguggauuu" siRNA in Human Genome sequences
See NC_004110 at Genbank
Pubmed:15596819
Article:La Crosse virus nonstructural protein NSs counteracts the effects of short interfering RNA.
Authors:Soldan SS, Plassmeyer ML, Matukonis MK, González-Scarano F.
Journal:J Virol. 2005 Jan;79(1):234-44.
Entrez:15596819

siRNA sequence "aaggcaacgcuauggcacucu" alignment with "La Crosse Virus" virus reference Genome sequences
siRNA sequence matching with "aaggcaacgcuauggcacucu" La Crosse Virus" Virus reference Genome sequences
Browse all the records for "La Crosse Virus" virus
Browse "virsi1414 " record
Length: 21
GC Content:52 %
GenBank Acc: NC_004110
Transfection Reagent: siPORT
Incubation Time (Hours):48

Offtargets for "aaggcaacgcuauggcacucu" siRNA in Human Genome sequences
See NC_004110 at Genbank
Pubmed:15596819
Article:La Crosse virus nonstructural protein NSs counteracts the effects of short interfering RNA.
Authors:Soldan SS, Plassmeyer ML, Matukonis MK, González-Scarano F.
Journal:J Virol. 2005 Jan;79(1):234-44.
Entrez:15596819

siRNA sequence "aaauuuggagaguggcaggugg" alignment with "La Crosse Virus" virus reference Genome sequences
siRNA sequence matching with "aaauuuggagaguggcaggugg" La Crosse Virus" Virus reference Genome sequences
Browse all the records for "La Crosse Virus" virus
Browse "virsi1416 " record
Length: 22
GC Content:50 %
GenBank Acc: NC_004110
Transfection Reagent: siPORT
Incubation Time (Hours):48

Offtargets for "aaauuuggagaguggcaggugg" siRNA in Human Genome sequences
See NC_004110 at Genbank
Pubmed:15596819
Article:La Crosse virus nonstructural protein NSs counteracts the effects of short interfering RNA.
Authors:Soldan SS, Plassmeyer ML, Matukonis MK, González-Scarano F.
Journal:J Virol. 2005 Jan;79(1):234-44.
Entrez:15596819

siRNA sequence "aaccuugcugcaguuagga" alignment with "La Crosse Virus" virus reference Genome sequences
siRNA sequence matching with "aaccuugcugcaguuagga" La Crosse Virus" Virus reference Genome sequences
Browse all the records for "La Crosse Virus" virus
Browse "virsi1417 " record
Length: 19
GC Content:47 %
GenBank Acc: NC_004110
Transfection Reagent: siPORT
Incubation Time (Hours):48

Offtargets for "aaccuugcugcaguuagga" siRNA in Human Genome sequences
See NC_004110 at Genbank
Pubmed:15596819
Article:La Crosse virus nonstructural protein NSs counteracts the effects of short interfering RNA.
Authors:Soldan SS, Plassmeyer ML, Matukonis MK, González-Scarano F.
Journal:J Virol. 2005 Jan;79(1):234-44.
Entrez:15596819

siRNA sequence "aacuugccgcacaucaaacc" alignment with "La Crosse Virus" virus reference Genome sequences
siRNA sequence matching with "aacuugccgcacaucaaacc" La Crosse Virus" Virus reference Genome sequences
Browse all the records for "La Crosse Virus" virus
Browse "virsi1418 " record
Length: 20
GC Content:50 %
GenBank Acc: NC_004110
Transfection Reagent: siPORT
Incubation Time (Hours):48

Offtargets for "aacuugccgcacaucaaacc" siRNA in Human Genome sequences
See NC_004110 at Genbank
Pubmed:15596819
Article:La Crosse virus nonstructural protein NSs counteracts the effects of short interfering RNA.
Authors:Soldan SS, Plassmeyer ML, Matukonis MK, González-Scarano F.
Journal:J Virol. 2005 Jan;79(1):234-44.
Entrez:15596819

siRNA sequence "aauuuccguacuagauguccc" alignment with "La Crosse Virus" virus reference Genome sequences
siRNA sequence matching with "aauuuccguacuagauguccc" La Crosse Virus" Virus reference Genome sequences
Browse all the records for "La Crosse Virus" virus
Browse "virsi1419 " record
Length: 21
GC Content:43 %
GenBank Acc: NC_004110
Transfection Reagent: siPORT
Incubation Time (Hours):48

Offtargets for "aauuuccguacuagauguccc" siRNA in Human Genome sequences
See NC_004110 at Genbank
Pubmed:15596819
Article:La Crosse virus nonstructural protein NSs counteracts the effects of short interfering RNA.
Authors:Soldan SS, Plassmeyer ML, Matukonis MK, González-Scarano F.
Journal:J Virol. 2005 Jan;79(1):234-44.
Entrez:15596819

siRNA sequence "uuacugcgguacuggucuu" alignment with "La Crosse Virus" virus reference Genome sequences
siRNA sequence matching with "uuacugcgguacuggucuu" La Crosse Virus" Virus reference Genome sequences
Browse all the records for "La Crosse Virus" virus
Browse "virsi1420 " record
Length: 19
GC Content:47 %
GenBank Acc: NC_004110
Transfection Reagent: siPORT
Incubation Time (Hours):48

Offtargets for "uuacugcgguacuggucuu" siRNA in Human Genome sequences
See NC_004110 at Genbank
Pubmed:15596819
Article:La Crosse virus nonstructural protein NSs counteracts the effects of short interfering RNA.
Authors:Soldan SS, Plassmeyer ML, Matukonis MK, González-Scarano F.
Journal:J Virol. 2005 Jan;79(1):234-44.
Entrez:15596819

siRNA sequence "agaugauauugcgggugcuu" alignment with "La Crosse Virus" virus reference Genome sequences
siRNA sequence matching with "agaugauauugcgggugcuu" La Crosse Virus" Virus reference Genome sequences
Browse all the records for "La Crosse Virus" virus
Browse "virsi1421 " record
Length: 20
GC Content:45 %
GenBank Acc: NC_004110
Transfection Reagent: siPORT
Incubation Time (Hours):48

Offtargets for "agaugauauugcgggugcuu" siRNA in Human Genome sequences
See NC_004110 at Genbank
Pubmed:15596819
Article:La Crosse virus nonstructural protein NSs counteracts the effects of short interfering RNA.
Authors:Soldan SS, Plassmeyer ML, Matukonis MK, González-Scarano F.
Journal:J Virol. 2005 Jan;79(1):234-44.
Entrez:15596819

siRNA sequence "ucaaacuugcgaacaccuu" alignment with "La Crosse Virus" virus reference Genome sequences
siRNA sequence matching with "ucaaacuugcgaacaccuu" La Crosse Virus" Virus reference Genome sequences
Browse all the records for "La Crosse Virus" virus
Browse "virsi1422 " record
Length: 19
GC Content:42 %
GenBank Acc: NC_004110
Transfection Reagent: siPORT
Incubation Time (Hours):48

Offtargets for "ucaaacuugcgaacaccuu" siRNA in Human Genome sequences
See NC_004110 at Genbank
Pubmed:15596819
Article:La Crosse virus nonstructural protein NSs counteracts the effects of short interfering RNA.
Authors:Soldan SS, Plassmeyer ML, Matukonis MK, González-Scarano F.
Journal:J Virol. 2005 Jan;79(1):234-44.
Entrez:15596819

siRNA sequence "auauguuugcagcgcagauu" alignment with "La Crosse Virus" virus reference Genome sequences
siRNA sequence matching with "auauguuugcagcgcagauu" La Crosse Virus" Virus reference Genome sequences
Browse all the records for "La Crosse Virus" virus
Browse "virsi1423 " record
Length: 20
GC Content:40 %
GenBank Acc: NC_004110
Transfection Reagent: siPORT
Incubation Time (Hours):48

Offtargets for "auauguuugcagcgcagauu" siRNA in Human Genome sequences
See NC_004110 at Genbank
Pubmed:15596819
Article:La Crosse virus nonstructural protein NSs counteracts the effects of short interfering RNA.
Authors:Soldan SS, Plassmeyer ML, Matukonis MK, González-Scarano F.
Journal:J Virol. 2005 Jan;79(1):234-44.
Entrez:15596819

siRNA sequence "aauggcuagucucugauug" alignment with "La Crosse Virus" virus reference Genome sequences
siRNA sequence matching with "aauggcuagucucugauug" La Crosse Virus" Virus reference Genome sequences
Browse all the records for "La Crosse Virus" virus
Browse "virsi1425 " record
Length: 19
GC Content:42 %
GenBank Acc: NC_004110
Transfection Reagent: siPORT
Incubation Time (Hours):48

Offtargets for "aauggcuagucucugauug" siRNA in Human Genome sequences
See NC_004110 at Genbank
Pubmed:15596819
Article:La Crosse virus nonstructural protein NSs counteracts the effects of short interfering RNA.
Authors:Soldan SS, Plassmeyer ML, Matukonis MK, González-Scarano F.
Journal:J Virol. 2005 Jan;79(1):234-44.
Entrez:15596819

siRNA sequence "aauauacgggaguccucaacg" alignment with "La Crosse Virus" virus reference Genome sequences
siRNA sequence matching with "aauauacgggaguccucaacg" La Crosse Virus" Virus reference Genome sequences
Browse all the records for "La Crosse Virus" virus
Browse "virsi1426 " record
Length: 21
GC Content:48 %
GenBank Acc: NC_004110
Transfection Reagent: siPORT
Incubation Time (Hours):48

Offtargets for "aauauacgggaguccucaacg" siRNA in Human Genome sequences
See NC_004110 at Genbank
Pubmed:15596819
Article:La Crosse virus nonstructural protein NSs counteracts the effects of short interfering RNA.
Authors:Soldan SS, Plassmeyer ML, Matukonis MK, González-Scarano F.
Journal:J Virol. 2005 Jan;79(1):234-44.
Entrez:15596819

siRNA sequence "agccagcacgcuacaugauu" alignment with "La Crosse Virus" virus reference Genome sequences
siRNA sequence matching with "agccagcacgcuacaugauu" La Crosse Virus" Virus reference Genome sequences
Browse all the records for "La Crosse Virus" virus
Browse "virsi1427 " record
Length: 20
GC Content:50 %
GenBank Acc: NC_004110
Transfection Reagent: siPORT
Incubation Time (Hours):48

Offtargets for "agccagcacgcuacaugauu" siRNA in Human Genome sequences
See NC_004110 at Genbank
Pubmed:15596819
Article:La Crosse virus nonstructural protein NSs counteracts the effects of short interfering RNA.
Authors:Soldan SS, Plassmeyer ML, Matukonis MK, González-Scarano F.
Journal:J Virol. 2005 Jan;79(1):234-44.
Entrez:15596819

siRNA sequence "aagacacaaccacuugcgga" alignment with "La Crosse Virus" virus reference Genome sequences
siRNA sequence matching with "aagacacaaccacuugcgga" La Crosse Virus" Virus reference Genome sequences
Browse all the records for "La Crosse Virus" virus
Browse "virsi1429 " record
Length: 20
GC Content:50 %
GenBank Acc: NC_004110
Transfection Reagent: siPORT
Incubation Time (Hours):48

Offtargets for "aagacacaaccacuugcgga" siRNA in Human Genome sequences
See NC_004110 at Genbank
Pubmed:15596819
Article:La Crosse virus nonstructural protein NSs counteracts the effects of short interfering RNA.
Authors:Soldan SS, Plassmeyer ML, Matukonis MK, González-Scarano F.
Journal:J Virol. 2005 Jan;79(1):234-44.
Entrez:15596819


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1424	uuuccuggcuaguggauuu	La Crosse Virus	L	293T	Viral Titer	Low	15596819	Blast SL	refseqs
virsi1414	aaggcaacgcuauggcacucu	La Crosse Virus	S	293T	Viral Titer	High	15596819	Blast SL	refseqs
virsi1416	aaauuuggagaguggcaggugg	La Crosse Virus	S	293T	Viral Titer	High	15596819	Blast SL	refseqs
virsi1417	aaccuugcugcaguuagga	La Crosse Virus	S	293T	Viral Titer	High	15596819	Blast SL	refseqs
virsi1418	aacuugccgcacaucaaacc	La Crosse Virus	M (G2)	293T	Viral Titer	High	15596819	Blast SL	refseqs
virsi1419	aauuuccguacuagauguccc	La Crosse Virus	M (G2)	293T	Viral Titer	High	15596819	Blast SL	refseqs
virsi1420	uuacugcgguacuggucuu	La Crosse Virus	M (G2)	293T	Viral Titer	High	15596819	Blast SL	refseqs
virsi1421	agaugauauugcgggugcuu	La Crosse Virus	M (G2)	293T	Viral Titer	High	15596819	Blast SL	refseqs
virsi1422	ucaaacuugcgaacaccuu	La Crosse Virus	M (G2)	293T	Viral Titer	High	15596819	Blast SL	refseqs
virsi1423	auauguuugcagcgcagauu	La Crosse Virus	M (G2)	293T	Viral Titer	High	15596819	Blast SL	refseqs
virsi1425	aauggcuagucucugauug	La Crosse Virus	M (G2)	293T	Viral Titer	High	15596819	Blast SL	refseqs
virsi1426	aauauacgggaguccucaacg	La Crosse Virus	L	293T	Viral Titer	High	15596819	Blast SL	refseqs
virsi1427	agccagcacgcuacaugauu	La Crosse Virus	L	293T	Viral Titer	High	15596819	Blast SL	refseqs
virsi1429	aagacacaaccacuugcgga	La Crosse Virus	L	293T	Viral Titer	High	15596819	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm