VIRsiRNAdb

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Total number of Results for 16464133 are 3
Results from 0 - 25

siRNA sequence "ggcugcggacuguuuggaa" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "ggcugcggacuguuuggaa" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1497 " record
Length: 19
GC Content:58 %
Starting position: 1287
GenBank Acc: NC_009942
Transfection Reagent: Lipofectamine
Incubation Time (Hours):72

Offtargets for "ggcugcggacuguuuggaa" siRNA in Human Genome sequences
See NC_009942 at Genbank
Pubmed:16464133
Article:A single siRNA suppresses fatal encephalitis induced by two different flaviviruses.
Authors:Kumar P, Lee SK, Shankar P, Manjunath N.
Journal:PLoS Med. 2006 Apr;3(4):e96. Epub 2006 Feb 14.
Entrez:16464133

siRNA sequence "ggauguggacuuuucggga" alignment with "Japanese Encephalitis Virus [JE]" virus reference Genome sequences
siRNA sequence matching with "ggauguggacuuuucggga" Japanese Encephalitis Virus [JE]" Virus reference Genome sequences
Browse all the records for "Japanese Encephalitis Virus [JE]" virus
Browse "virsi1498 " record
Length: 19
GC Content:53 %
Starting position: 1287
GenBank Acc: NC_006551
Transfection Reagent: Lipofectamine

Offtargets for "ggauguggacuuuucggga" siRNA in Human Genome sequences
See NC_006551 at Genbank
Pubmed:16464133
Article:A single siRNA suppresses fatal encephalitis induced by two different flaviviruses.
Authors:Kumar P, Lee SK, Shankar P, Manjunath N.
Journal:PLoS Med. 2006 Apr;3(4):e96. Epub 2006 Feb 14.
Entrez:16464133

siRNA sequence "gggagcauugacacaugugca" alignment with "Japanese Encephalitis Virus [JE]" virus reference Genome sequences
siRNA sequence matching with "gggagcauugacacaugugca" Japanese Encephalitis Virus [JE]" Virus reference Genome sequences
Browse all the records for "Japanese Encephalitis Virus [JE]" virus
Browse "virsi1499 " record
Length: 21
GC Content:52 %
Starting position: 1307
GenBank Acc: 16464133
Transfection Reagent: Lipofectamine

Offtargets for "gggagcauugacacaugugca" siRNA in Human Genome sequences
See 16464133 at Genbank
Pubmed:16464133
Article:A single siRNA suppresses fatal encephalitis induced by two different flaviviruses.
Authors:Kumar P, Lee SK, Shankar P, Manjunath N.
Journal:PLoS Med. 2006 Apr;3(4):e96. Epub 2006 Feb 14.
Entrez:16464133


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1497	ggcugcggacuguuuggaa	West Nile Virus [WNV]	E	Monkey Kidney Cells	Cell Count	100	16464133	Blast SL	refseqs
virsi1498	ggauguggacuuuucggga	Japanese Encephalitis Virus [JE]	E	Monkey Kidney Cells	Viral Load	90	16464133	Blast SL	refseqs
virsi1499	gggagcauugacacaugugca	Japanese Encephalitis Virus [JE]	E	Monkey Kidney Cells	Viral Load	90	16464133	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm