VIRsiRNAdb

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Total number of Results for 17222937 are 7
Results from 0 - 25

siRNA sequence "cacaccaaauuauguaugu" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "cacaccaaauuauguaugu" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi2160 " record
Length: 19
GC Content:32 %
Strain of Virus: B3
GenBank Acc: U57056
Transfection Reagent: Lipofectamine
Incubation Time (Hours):48

Offtargets for "cacaccaaauuauguaugu" siRNA in Human Genome sequences
See U57056 at Genbank
Pubmed:17222937
Article:Expression of short hairpin RNAs against the coxsackievirus B3 exerts potential antiviral effects in Cos-7 cells and in mice.
Authors:Kim JY, Chung SK, Hwang HY, Kim H, Kim JH, Nam JH, Park SI.
Journal:Virus Res. 2007 Apr;125(1):9-13. Epub 2007 Jan 12.
Entrez:17222937

siRNA sequence "uuggcuuaacccuacugua" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "uuggcuuaacccuacugua" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi2163 " record
Length: 19
GC Content:42 %
Strain of Virus: B3
GenBank Acc: U57056
Transfection Reagent: Lipofectamine
Incubation Time (Hours):48

Offtargets for "uuggcuuaacccuacugua" siRNA in Human Genome sequences
See U57056 at Genbank
Pubmed:17222937
Article:Expression of short hairpin RNAs against the coxsackievirus B3 exerts potential antiviral effects in Cos-7 cells and in mice.
Authors:Kim JY, Chung SK, Hwang HY, Kim H, Kim JH, Nam JH, Park SI.
Journal:Virus Res. 2007 Apr;125(1):9-13. Epub 2007 Jan 12.
Entrez:17222937

siRNA sequence "uuggcuuaacccuacugua" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "uuggcuuaacccuacugua" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi2164 " record
Length: 19
GC Content:42 %
Strain of Virus: B3
GenBank Acc: U57056
Transfection Reagent: Lipofectamine
Incubation Time (Hours):48

Offtargets for "uuggcuuaacccuacugua" siRNA in Human Genome sequences
See U57056 at Genbank
Pubmed:17222937
Article:Expression of short hairpin RNAs against the coxsackievirus B3 exerts potential antiviral effects in Cos-7 cells and in mice.
Authors:Kim JY, Chung SK, Hwang HY, Kim H, Kim JH, Nam JH, Park SI.
Journal:Virus Res. 2007 Apr;125(1):9-13. Epub 2007 Jan 12.
Entrez:17222937

siRNA sequence "gaacuaccauucaaggucu" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "gaacuaccauucaaggucu" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi2159 " record
Length: 19
GC Content:42 %
Strain of Virus: B3
GenBank Acc: U57056
Transfection Reagent: Lipofectamine
Incubation Time (Hours):48

Offtargets for "gaacuaccauucaaggucu" siRNA in Human Genome sequences
See U57056 at Genbank
Pubmed:17222937
Article:Expression of short hairpin RNAs against the coxsackievirus B3 exerts potential antiviral effects in Cos-7 cells and in mice.
Authors:Kim JY, Chung SK, Hwang HY, Kim H, Kim JH, Nam JH, Park SI.
Journal:Virus Res. 2007 Apr;125(1):9-13. Epub 2007 Jan 12.
Entrez:17222937

siRNA sequence "guuacuuggacuaacguca" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "guuacuuggacuaacguca" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi2161 " record
Length: 19
GC Content:42 %
Strain of Virus: B3
GenBank Acc: U57056
Transfection Reagent: Lipofectamine
Incubation Time (Hours):48

Offtargets for "guuacuuggacuaacguca" siRNA in Human Genome sequences
See U57056 at Genbank
Pubmed:17222937
Article:Expression of short hairpin RNAs against the coxsackievirus B3 exerts potential antiviral effects in Cos-7 cells and in mice.
Authors:Kim JY, Chung SK, Hwang HY, Kim H, Kim JH, Nam JH, Park SI.
Journal:Virus Res. 2007 Apr;125(1):9-13. Epub 2007 Jan 12.
Entrez:17222937

siRNA sequence "gugguuggacucuuucuaa" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "gugguuggacucuuucuaa" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi2162 " record
Length: 19
GC Content:42 %
Strain of Virus: B3
GenBank Acc: U57056
Transfection Reagent: Lipofectamine
Incubation Time (Hours):48

Offtargets for "gugguuggacucuuucuaa" siRNA in Human Genome sequences
See U57056 at Genbank
Pubmed:17222937
Article:Expression of short hairpin RNAs against the coxsackievirus B3 exerts potential antiviral effects in Cos-7 cells and in mice.
Authors:Kim JY, Chung SK, Hwang HY, Kim H, Kim JH, Nam JH, Park SI.
Journal:Virus Res. 2007 Apr;125(1):9-13. Epub 2007 Jan 12.
Entrez:17222937

siRNA sequence "cuacuucgaaaaacccagu" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "cuacuucgaaaaacccagu" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi2158 " record
Length: 19
GC Content:42 %
Strain of Virus: B3
GenBank Acc: U57056
Transfection Reagent: Lipofectamine
Incubation Time (Hours):48

Offtargets for "cuacuucgaaaaacccagu" siRNA in Human Genome sequences
See U57056 at Genbank
Pubmed:17222937
Article:Expression of short hairpin RNAs against the coxsackievirus B3 exerts potential antiviral effects in Cos-7 cells and in mice.
Authors:Kim JY, Chung SK, Hwang HY, Kim H, Kim JH, Nam JH, Park SI.
Journal:Virus Res. 2007 Apr;125(1):9-13. Epub 2007 Jan 12.
Entrez:17222937


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi2160	cacaccaaauuauguaugu	Human Coxsackievirus [CV]	VP1	COS-7	mRNA	Low	17222937	Blast SL	refseqs
virsi2163	uuggcuuaacccuacugua	Human Coxsackievirus [CV]	3'UTR	COS-7	mRNA	Low	17222937	Blast SL	refseqs
virsi2164	uuggcuuaacccuacugua	Human Coxsackievirus [CV]	3'UTR	COS-7	mRNA	Low	17222937	Blast SL	refseqs
virsi2159	gaacuaccauucaaggucu	Human Coxsackievirus [CV]	VP1	COS-7	mRNA	High	17222937	Blast SL	refseqs
virsi2161	guuacuuggacuaacguca	Human Coxsackievirus [CV]	3D	COS-7	mRNA	High	17222937	Blast SL	refseqs
virsi2162	gugguuggacucuuucuaa	Human Coxsackievirus [CV]	3D	COS-7	mRNA	High	17222937	Blast SL	refseqs
virsi2158	cuacuucgaaaaacccagu	Human Coxsackievirus [CV]	5'UTR	COS-7	mRNA	0	17222937	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm