VIRsiRNAdb

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Total number of Results for 18394725 are 12
Results from 0 - 25

siRNA sequence "gguucggaugguucgggaa" alignment with "Measles Virus" virus reference Genome sequences
siRNA sequence matching with "gguucggaugguucgggaa" Measles Virus" Virus reference Genome sequences
Browse all the records for "Measles Virus" virus
Browse "virsi1939 " record
Length: 19
GC Content:58 %
Starting position: 428
Strain of Virus: MMV
GenBank Acc: U03668
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):96

Offtargets for "gguucggaugguucgggaa" siRNA in Human Genome sequences
See U03668 at Genbank
Pubmed:18394725
Article:Structure and sequence motifs of siRNA linked with in vitro down-regulation of morbillivirus gene expression.
Authors:de Almeida RS, Keita D, Libeau G, Albina E.
Journal:Antiviral Res. 2008 Jul;79(1):37-48. Epub 2008 Mar 11.
Entrez:18394725

siRNA sequence "ggagcuuagcauuguucaa" alignment with "Measles Virus" virus reference Genome sequences
siRNA sequence matching with "ggagcuuagcauuguucaa" Measles Virus" Virus reference Genome sequences
Browse all the records for "Measles Virus" virus
Browse "virsi1948 " record
Length: 19
GC Content:42 %
Starting position: 17
Strain of Virus: MMV
GenBank Acc: U03668
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):96

Offtargets for "ggagcuuagcauuguucaa" siRNA in Human Genome sequences
See U03668 at Genbank
Pubmed:18394725
Article:Structure and sequence motifs of siRNA linked with in vitro down-regulation of morbillivirus gene expression.
Authors:de Almeida RS, Keita D, Libeau G, Albina E.
Journal:Antiviral Res. 2008 Jul;79(1):37-48. Epub 2008 Mar 11.
Entrez:18394725

siRNA sequence "agguucggaugguucgaga" alignment with "Measles Virus" virus reference Genome sequences
siRNA sequence matching with "agguucggaugguucgaga" Measles Virus" Virus reference Genome sequences
Browse all the records for "Measles Virus" virus
Browse "virsi1940 " record
Length: 19
GC Content:53 %
Starting position: 534
Strain of Virus: MMV
GenBank Acc: AF266288
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):96

Offtargets for "agguucggaugguucgaga" siRNA in Human Genome sequences
See AF266288 at Genbank
Pubmed:18394725
Article:Structure and sequence motifs of siRNA linked with in vitro down-regulation of morbillivirus gene expression.
Authors:de Almeida RS, Keita D, Libeau G, Albina E.
Journal:Antiviral Res. 2008 Jul;79(1):37-48. Epub 2008 Mar 11.
Entrez:18394725

siRNA sequence "gcucuuggacugcaugaau" alignment with "Measles Virus" virus reference Genome sequences
siRNA sequence matching with "gcucuuggacugcaugaau" Measles Virus" Virus reference Genome sequences
Browse all the records for "Measles Virus" virus
Browse "virsi1945 " record
Length: 19
GC Content:47 %
Starting position: 954
Strain of Virus: MMV
GenBank Acc: AF266288
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):96

Offtargets for "gcucuuggacugcaugaau" siRNA in Human Genome sequences
See AF266288 at Genbank
Pubmed:18394725
Article:Structure and sequence motifs of siRNA linked with in vitro down-regulation of morbillivirus gene expression.
Authors:de Almeida RS, Keita D, Libeau G, Albina E.
Journal:Antiviral Res. 2008 Jul;79(1):37-48. Epub 2008 Mar 11.
Entrez:18394725

siRNA sequence "gccgauucauggucgcucu" alignment with "Measles Virus" virus reference Genome sequences
siRNA sequence matching with "gccgauucauggucgcucu" Measles Virus" Virus reference Genome sequences
Browse all the records for "Measles Virus" virus
Browse "virsi1943 " record
Length: 19
GC Content:58 %
Starting position: 796
Strain of Virus: MMV
GenBank Acc: AF266288
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):96

Offtargets for "gccgauucauggucgcucu" siRNA in Human Genome sequences
See AF266288 at Genbank
Pubmed:18394725
Article:Structure and sequence motifs of siRNA linked with in vitro down-regulation of morbillivirus gene expression.
Authors:de Almeida RS, Keita D, Libeau G, Albina E.
Journal:Antiviral Res. 2008 Jul;79(1):37-48. Epub 2008 Mar 11.
Entrez:18394725

siRNA sequence "ccugcucuuggacugcaug" alignment with "Measles Virus" virus reference Genome sequences
siRNA sequence matching with "ccugcucuuggacugcaug" Measles Virus" Virus reference Genome sequences
Browse all the records for "Measles Virus" virus
Browse "virsi1947 " record
Length: 19
GC Content:58 %
Starting position: 951
Strain of Virus: MMV
GenBank Acc: AF266288
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):96

Offtargets for "ccugcucuuggacugcaug" siRNA in Human Genome sequences
See AF266288 at Genbank
Pubmed:18394725
Article:Structure and sequence motifs of siRNA linked with in vitro down-regulation of morbillivirus gene expression.
Authors:de Almeida RS, Keita D, Libeau G, Albina E.
Journal:Antiviral Res. 2008 Jul;79(1):37-48. Epub 2008 Mar 11.
Entrez:18394725

siRNA sequence "gcugauucggagcuaagaa" alignment with "Measles Virus" virus reference Genome sequences
siRNA sequence matching with "gcugauucggagcuaagaa" Measles Virus" Virus reference Genome sequences
Browse all the records for "Measles Virus" virus
Browse "virsi1950 " record
Length: 19
GC Content:47 %
Starting position: 565
Strain of Virus: MMV
GenBank Acc: U03668
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):96

Offtargets for "gcugauucggagcuaagaa" siRNA in Human Genome sequences
See U03668 at Genbank
Pubmed:18394725
Article:Structure and sequence motifs of siRNA linked with in vitro down-regulation of morbillivirus gene expression.
Authors:de Almeida RS, Keita D, Libeau G, Albina E.
Journal:Antiviral Res. 2008 Jul;79(1):37-48. Epub 2008 Mar 11.
Entrez:18394725

siRNA sequence "ccgguuggugagguuaauu" alignment with "Measles Virus" virus reference Genome sequences
siRNA sequence matching with "ccgguuggugagguuaauu" Measles Virus" Virus reference Genome sequences
Browse all the records for "Measles Virus" virus
Browse "virsi1949 " record
Length: 19
GC Content:47 %
Starting position: 159
Strain of Virus: MMV
GenBank Acc: U03668
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):96

Offtargets for "ccgguuggugagguuaauu" siRNA in Human Genome sequences
See U03668 at Genbank
Pubmed:18394725
Article:Structure and sequence motifs of siRNA linked with in vitro down-regulation of morbillivirus gene expression.
Authors:de Almeida RS, Keita D, Libeau G, Albina E.
Journal:Antiviral Res. 2008 Jul;79(1):37-48. Epub 2008 Mar 11.
Entrez:18394725

siRNA sequence "cagguucggaugguucgag" alignment with "Measles Virus" virus reference Genome sequences
siRNA sequence matching with "cagguucggaugguucgag" Measles Virus" Virus reference Genome sequences
Browse all the records for "Measles Virus" virus
Browse "virsi1941 " record
Length: 19
GC Content:58 %
Starting position: 533
Strain of Virus: MMV
GenBank Acc: AF266288
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):96

Offtargets for "cagguucggaugguucgag" siRNA in Human Genome sequences
See AF266288 at Genbank
Pubmed:18394725
Article:Structure and sequence motifs of siRNA linked with in vitro down-regulation of morbillivirus gene expression.
Authors:de Almeida RS, Keita D, Libeau G, Albina E.
Journal:Antiviral Res. 2008 Jul;79(1):37-48. Epub 2008 Mar 11.
Entrez:18394725

siRNA sequence "cugcucuuggacugcauga" alignment with "Measles Virus" virus reference Genome sequences
siRNA sequence matching with "cugcucuuggacugcauga" Measles Virus" Virus reference Genome sequences
Browse all the records for "Measles Virus" virus
Browse "virsi1946 " record
Length: 19
GC Content:53 %
Starting position: 952
Strain of Virus: MMV
GenBank Acc: AF266288
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):96

Offtargets for "cugcucuuggacugcauga" siRNA in Human Genome sequences
See AF266288 at Genbank
Pubmed:18394725
Article:Structure and sequence motifs of siRNA linked with in vitro down-regulation of morbillivirus gene expression.
Authors:de Almeida RS, Keita D, Libeau G, Albina E.
Journal:Antiviral Res. 2008 Jul;79(1):37-48. Epub 2008 Mar 11.
Entrez:18394725

siRNA sequence "guucggaugguucgagaac" alignment with "Measles Virus" virus reference Genome sequences
siRNA sequence matching with "guucggaugguucgagaac" Measles Virus" Virus reference Genome sequences
Browse all the records for "Measles Virus" virus
Browse "virsi1942 " record
Length: 19
GC Content:53 %
Starting position: 536
Strain of Virus: MMV
GenBank Acc: AF266288
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):96

Offtargets for "guucggaugguucgagaac" siRNA in Human Genome sequences
See AF266288 at Genbank
Pubmed:18394725
Article:Structure and sequence motifs of siRNA linked with in vitro down-regulation of morbillivirus gene expression.
Authors:de Almeida RS, Keita D, Libeau G, Albina E.
Journal:Antiviral Res. 2008 Jul;79(1):37-48. Epub 2008 Mar 11.
Entrez:18394725

siRNA sequence "cgccgauucauggucgcuc" alignment with "Measles Virus" virus reference Genome sequences
siRNA sequence matching with "cgccgauucauggucgcuc" Measles Virus" Virus reference Genome sequences
Browse all the records for "Measles Virus" virus
Browse "virsi1944 " record
Length: 19
GC Content:63 %
Starting position: 795
Strain of Virus: MMV
GenBank Acc: AF266288
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):96

Offtargets for "cgccgauucauggucgcuc" siRNA in Human Genome sequences
See AF266288 at Genbank
Pubmed:18394725
Article:Structure and sequence motifs of siRNA linked with in vitro down-regulation of morbillivirus gene expression.
Authors:de Almeida RS, Keita D, Libeau G, Albina E.
Journal:Antiviral Res. 2008 Jul;79(1):37-48. Epub 2008 Mar 11.
Entrez:18394725


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1939	gguucggaugguucgggaa	Measles Virus	N	Vero	Protein	90	18394725	Blast SL	refseqs
virsi1948	ggagcuuagcauuguucaa	Measles Virus	N	Vero	Protein	85	18394725	Blast SL	refseqs
virsi1940	agguucggaugguucgaga	Measles Virus	N	Vero	Protein	85	18394725	Blast SL	refseqs
virsi1945	gcucuuggacugcaugaau	Measles Virus	N	Vero	Protein	52	18394725	Blast SL	refseqs
virsi1943	gccgauucauggucgcucu	Measles Virus	N	Vero	Protein	52	18394725	Blast SL	refseqs
virsi1947	ccugcucuuggacugcaug	Measles Virus	N	Vero	Protein	43	18394725	Blast SL	refseqs
virsi1950	gcugauucggagcuaagaa	Measles Virus	N	Vero	Protein	42	18394725	Blast SL	refseqs
virsi1949	ccgguuggugagguuaauu	Measles Virus	N	Vero	Protein	38	18394725	Blast SL	refseqs
virsi1941	cagguucggaugguucgag	Measles Virus	N	Vero	Protein	36	18394725	Blast SL	refseqs
virsi1946	cugcucuuggacugcauga	Measles Virus	N	Vero	Protein	28	18394725	Blast SL	refseqs
virsi1942	guucggaugguucgagaac	Measles Virus	N	Vero	Protein	25	18394725	Blast SL	refseqs
virsi1944	cgccgauucauggucgcuc	Measles Virus	N	Vero	Protein	21	18394725	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm