Representation of Major Biochemical Pathway categories by the genes in PCMdb


A list of genes in PCMdb that can be classified as "Protein binding Transcription factors" by the UniProt database has been provided below.
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Gene Symbol Gene Name # of Entries
ACTL6Bactin-like 6B21
ACTN2actinin, alpha 240
AEBP1AE binding protein 120
JUBajuba LIM protein1
PRMT2protein arginine methyltransferase 21
TEX2transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)1
TFtranscription factor AP-2 beta (activating enhancer binding protein 2 beta)675
ARNTLaryl hydrocarbon receptor nuclear translocator1
ASCL1achaete-scute complex homolog 1 (Drosophila)20
BASP1brain abundant, membrane attached signal protein 130
BCL11AB-cell CLL/lymphoma 11A (zinc finger protein)1
BCL10B-cell CLL/lymphoma 109
BCORL1BCL6 corepressor10
ARNTaryl hydrocarbon receptor nuclear translocator-like10
TM6SF1T, brachyury homolog (mouse)22
TT, brachyury homolog (mouse)25493
BRCA1breast cancer 1, early onset101
CREBBPCREB binding protein13
CBX4chromobox homolog 429
CCNE1cyclin E110
CDX2caudal type homeobox 210
CITED1Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 11
NR2F1nuclear receptor subfamily 2, group F, member 110
NR2F2nuclear receptor subfamily 2, group F, member 210
CREB1cAMP responsive element binding protein 19
CREMcAMP responsive element modulator1
KCNIP3Kv channel interacting protein 3, calsenilin1
CTBP1C-terminal binding protein 110
CTBP2C-terminal binding protein 21
DCCdeleted in colorectal carcinoma192
DNMT3BDNA (cytosine-5-)-methyltransferase 3 beta14
E4F1E4F transcription factor 11
ENO1enolase 1, (alpha)1
ESRRBestrogen-related receptor beta10
FEVFEV (ETS oncogene family)1
FGF22fibroblast growth factor 2 (basic)9
ZFPM2zinc finger protein, FOG family member 21
GATA3GATA binding protein 311
GATA4GATA binding protein 421
HAND1heart and neural crest derivatives expressed 154
HAND2heart and neural crest derivatives expressed 230
HCFC1host cell factor C1 (VP16-accessory protein)9
HDAC1histone deacetylase 113
HDAC4histone deacetylase 41
HEY1hairy/enhancer-of-split related with YRPW motif 19
HEYLhairy/enhancer-of-split related with YRPW motif-like20
HSF4heat shock transcription factor 411
ID4inhibitor of DNA binding 4, dominant negative helix-loop-helix protein10
IRF3interferon regulatory factor 31
ISL1ISL LIM homeobox 11
TCF21transcription factor 430
JMYjunction mediating and regulatory protein, p53 cofactor1
JUNBjun B proto-oncogene9
KCTD1potassium channel tetramerization domain containing 129
KDM1lysine (K)-specific demethylase 1A1
PRKCBprotein kinase C, beta31
PRKCB1protein kinase C, beta21
LHX1LIM homeobox 195
LHX2LIM homeobox 241
LHX3LIM homeobox 311
LHX9LIM homeobox 910
LIFleukemia inhibitory factor13
MAP3K1mitogen-activated protein kinase kinase kinase 1022
MAML3mastermind-like 3 (Drosophila)10
FLJ36070MEF2 activating motif and SAP domain containing transcriptional regulator20
MED12Lmediator complex subunit 12-like1
MED16mediator complex subunit 161
MED17mediator complex subunit 171
MED22mediator complex subunit 229
MED7mediator complex subunit 79
MEIS2Meis homeobox 21
MSX2msh homeobox 21
MUC17mucin 1, cell surface associated24
MSCmusculin21
MYOD1myogenic differentiation 1104
NCOA4nuclear receptor coactivator 49
NCOR2nuclear receptor corepressor 210
NEUROD1neuronal differentiation 149
NEUROD2neuronal differentiation 220
NFATC4nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 41
NFIL3nuclear factor, interleukin 3 regulated1
NEUROG1neurogenin 191
NGN1neurogenin 124
NEUROG3neurogenin 330
NKX2-2NK2 homeobox 230
NKX2-5NK2 homeobox 530
NMIN-myc (and STAT) interactor1
NOTCH1notch 11
NR0B1nuclear receptor subfamily 0, group B, member 11
NR1D1nuclear receptor subfamily 1, group D, member 11
NR1I2nuclear receptor subfamily 1, group I, member 210
NR1I3nuclear receptor subfamily 1, group I, member 320
NRG1neuregulin 123
PITX1paired-like homeodomain 110
PITX2paired-like homeodomain 263
PMF1polyamine-modulated factor 11
POU3F1POU class 3 homeobox 130
POU3F2POU class 3 homeobox 230
PPARGC1Bperoxisome proliferator-activated receptor gamma1
PRDM16PR domain containing 1619
PPARGperoxisome proliferator-activated receptor gamma, coactivator 1 beta14
PRRX1paired related homeobox 121
PSMC3proteasome (prosome, macropain) 26S subunit, ATPase, 31
RARAretinoic acid receptor, alpha96
RBPMSRNA binding protein with multiple splicing1
RCOR2REST corepressor 29
RIPK3receptor-interacting serine-threonine kinase 333
SETD8SET domain containing (lysine methyltransferase) 89
SIN3ASIN3 transcription regulator homolog A (yeast)1
SKIv-ski sarcoma viral oncogene homolog (avian)41
LBXCOR1SKI family transcriptional corepressor 110
SMARCD3SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 310
SND1staphylococcal nuclease and tudor domain containing 11
SMARCB1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 19
SKIPSNW domain containing 140
SOX1SRY (sex determining region Y)-box 10229
SOX10SRY (sex determining region Y)-box 111
SOX15SRY (sex determining region Y)-box 1751
SOX3SRY (sex determining region Y)-box 310
NR5A1nuclear receptor subfamily 5, group A, member 110
TACR3TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa20
TAF1TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa1
TAF4TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa10
TBKBP1transducin (beta)-like 1X-linked9
TBR1T-box 1510
TBX1T-box 1833
TBX18T-box 2010
TBX5T-box 650
TGFBR2TGFB-induced factor homeobox 11
TJP2transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)30
NFKBIL2tonsoku-like, DNA repair protein9
TSG101tumor susceptibility gene 10113
UBE3Aubiquitin protein ligase E3A1
UBP1upstream binding protein 1 (LBP-1a)9
UTF1undifferentiated embryonic cell transcription factor 130
VGLL2vestigial like 2 (Drosophila)40
WNT3wingless-type MMTV integration site family, member 3A31
WWTR1WW domain containing transcription regulator 11
YAP1Yes-associated protein 165
ZEB1zinc finger E-box binding homeobox 11
ZNF593zinc finger protein 59320
ZSCAN18zinc finger and SCAN domain containing 11
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