Circulating Free Nucleic Acid Genes reported in cancers and present in PCMdb


This page gives a list of genes that have been reported to be potential biomarkers in cancers other than pancreatic cancer as free nucleic acid fragments originated from these genes and circulate in blood and the methylation status of these genes can be found out from these circulating free nucleic acid fragments. Corresponding to each gene, the number of entries in PCMdb that report high, intermediate or low level methylation has been given. For more information, please click HERE .

** : Information from other litratures# : Infromation from our data collection (PCMdb)

Search:
S. No. ** Reported
Methylated Gene
** Reported
Cancer Type
# of
PCMdb Entries
# of
High Methylation
# of
Intermediate Methylation
# of
Low Methylation
# of
Cell Lines studied
1ALX4Colorectal,Bladder2291080027
2APBA1Bladder12120012
3APCBreast,Lung,Hepatocellular,Bladder,Prostate100330020
4BCL2Bladder40160020
5BMP6Breast99009
6BRCA1Breast,Ovarian,Bladder12120012
7CALCAOvarian49230027
8CCNA1Head and Neck Squamous Cell,Bladder82580034
9CCND2Pancreatic141570034
10CDH13Non Small Cell Lung,Bladder,Lung143750028
11CDH17Prostate,Bladder,Renal Cell12120012
12CDH4Colorectal99009
13CDKN2ANon Small Cell Lung,Lung11001
14CYP26B1Gastric29180027
15DAPKLung90089
16DAPK1Lung32180028
17DCCHead and Neck Squamous Cell,Lung180740020
18DKK3Breast60066
19EPB41L3Lung20130020
20ESR1Breast102530034
21GATA4Non Small Cell Lung,Colorectal2080020
22GATA5Lung99009
23GREM1Bladder29170027
24HIC1Head and Neck Squamous Cell,Ovarian24240020
25HOXA9Bladder121860034
26HSPA2Bladder99009
27IGFBP3Non Small Cell Lung110520027
28ITGA4Bladder30170027
29KCNA4Gastric40150020
30KCNV1Bladder30140027
31KLK10Lung2060020
32KLK3Prostate2050020
33LCN2Pancreatic12120012
34MGMTHead and Neck Squamous Cell3080922
35MINT1Bladder90049
36MINT31Head and Neck Squamous Cell90029
37MLH1Gastric60190020
38MYOD1Bladder102540034
39NDRG4Colorectal41110020
40NEUROD1Breast49250027
41NGFRColorectal90099
42NPTX2Pancreatic52330029
43PAX5Ovarian36150028
44PCDH17Prostate,Bladder,Renal29140027
45PGROvarian1090010
46PITX2Breast61390034
47PLAUPancreatic90099
48POU4F2Bladder49310027
49RARRES1Bladder10001
50RARB2Breast,Bladder90049
51RASSF1Breast2050020
52RASSF1ABreast,Lung,Hepatocellular,Ovarian,Bladder,Prostate85218
53REPRIMOProstate189019
54RPRMProstate,Bladder40150020
55RUNX3Colorectal,Bladder108454334
56SALL3Bladder50330027
57SEPT9Colorectal99009
58SFRP1Hepatocellular103620134
59SOCS1Pancreatic,Melanoma23140021
60SOCS2Melanoma129630027
61SOX17Breast41310034
62TAL1Bladder13120012
63TCF21Prostate,Bladder,Renal29100927
64TERTLung99009
65TFPI2Hepatocellular,Colorectal142620034
66THBS1Ovarian90089
67TIMP3Head and Neck Squamous Cell,Bladder,Breast81310829
68TITF1Breast2060020
69TMEFF2Colorectal,Bladder12120012
70TMS1Non Small Cell Lung31023
71UCHL1Head and Neck Squamous Cell58320022
72VAX1Bladder99009
73VIMColorectal,Bladder29140027
74WIF1Colorectal29150027
75WT1Lung2811440034
76ZNF154Bladder50350027
77hMLH1Colorectal cancer90909

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