VIRsiRNAdb

siRNA sequence "acagccuguggguugaucc" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences

siRNA sequence matching with "acagccuguggguugaucc" Human Coxsackievirus [CV]" Virus reference Genome sequences

Browse all the records for "Human Coxsackievirus [CV]" virus

Browse "virsi1801 " record
Length: 19
GC Content:58 %
Starting position: 6
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "acagccuguggguugaucc" siRNA in Human Genome sequences

See M33854 at Genbank

Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410

siRNA sequence "guaacacacaccgaucaac" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences

siRNA sequence matching with "guaacacacaccgaucaac" Human Coxsackievirus [CV]" Virus reference Genome sequences

Browse all the records for "Human Coxsackievirus [CV]" virus

Browse "virsi1802 " record
Length: 19
GC Content:47 %
Starting position: 115
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "guaacacacaccgaucaac" siRNA in Human Genome sequences

See M33854 at Genbank

Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410

siRNA sequence "ggagaaagcguucguuauc" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences

siRNA sequence matching with "ggagaaagcguucguuauc" Human Coxsackievirus [CV]" Virus reference Genome sequences

Browse all the records for "Human Coxsackievirus [CV]" virus

Browse "virsi1803 " record
Length: 19
GC Content:47 %
Starting position: 219
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ggagaaagcguucguuauc" siRNA in Human Genome sequences

See M33854 at Genbank

Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410

siRNA sequence "uacagacauggugcgaaga" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences

siRNA sequence matching with "uacagacauggugcgaaga" Human Coxsackievirus [CV]" Virus reference Genome sequences

Browse all the records for "Human Coxsackievirus [CV]" virus

Browse "virsi1804 " record
Length: 19
GC Content:47 %
Starting position: 406
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "uacagacauggugcgaaga" siRNA in Human Genome sequences

See M33854 at Genbank

Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410

siRNA sequence "ccgacuacuuugggugucc" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences

siRNA sequence matching with "ccgacuacuuugggugucc" Human Coxsackievirus [CV]" Virus reference Genome sequences

Browse all the records for "Human Coxsackievirus [CV]" virus

Browse "virsi1805 " record
Length: 19
GC Content:58 %
Starting position: 540
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ccgacuacuuugggugucc" siRNA in Human Genome sequences

See M33854 at Genbank

Pubmed:16164410
Article:Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor.
Authors:Werk D, Schubert S, Lindig V, Grunert HP, Zeichhardt H, Erdmann VA, Kurreck J.
Journal:Biol Chem. 2005 Sep;386(9):857-63.
Entrez:16164410

siRNA sequence "ggccuugugguacugccug" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ggccuugugguacugccug" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2156 " record
Length: 19
GC Content:63 %
GenBank Acc: NC_004102
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggccuugugguacugccug" siRNA in Human Genome sequences

See NC_004102 at Genbank

Pubmed:12740604
Article:Inhibition of intracellular hepatitis C virus replication by synthetic and vector-derived small interfering RNAs.
Authors:Yokota T, Sakamoto N, Enomoto N, Tanabe Y, Miyagishi M, Maekawa S, Yi L, Kurosaki M, Taira K, Watanabe M, Mizusawa H.
Journal:EMBO Rep. 2003 Jun;4(6):602-8.
Entrez:12740604

siRNA sequence "aguuguuagucuacguggac" alignment with "Dengue Virus [DENV]" virus reference Genome sequences

siRNA sequence matching with "aguuguuagucuacguggac" Dengue Virus [DENV]" Virus reference Genome sequences

Browse all the records for "Dengue Virus [DENV]" virus

Browse "virsi2331 " record
Length: 20
GC Content:45 %
Starting position: 1
Strain of Virus: DENV-1-4
GenBank Acc: AY947539
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48

Offtargets for "aguuguuagucuacguggac" siRNA in Human Genome sequences

See AY947539 at Genbank

Pubmed:21795337
Article:Inhibition of dengue virus infections in cell cultures and in AG129 mice by an siRNA targeting a highly conserved sequence. Stein DA, Perry ST, Buck MD, Oehmen CS, Fischer MA, Poore E, Smith JL, Lancaster AM, Hirsch AJ, Slifka MK, Nelson JA, Shresta S, Fraceh K. J Virol. 2011 Jul 27. [Epub ahead of print] J Virol. 2011 21795337
Authors:
Journal:
Entrez:

siRNA sequence "gcgucuagccauggcguua" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "gcgucuagccauggcguua" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2154 " record
Length: 19
GC Content:58 %
GenBank Acc: NC_004102
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gcgucuagccauggcguua" siRNA in Human Genome sequences

See NC_004102 at Genbank

Pubmed:12740604
Article:Inhibition of intracellular hepatitis C virus replication by synthetic and vector-derived small interfering RNAs.
Authors:Yokota T, Sakamoto N, Enomoto N, Tanabe Y, Miyagishi M, Maekawa S, Yi L, Kurosaki M, Taira K, Watanabe M, Mizusawa H.
Journal:EMBO Rep. 2003 Jun;4(6):602-8.
Entrez:12740604

siRNA sequence "ggacgaccggguccuuucu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ggacgaccggguccuuucu" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2155 " record
Length: 19
GC Content:63 %
GenBank Acc: NC_004102
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggacgaccggguccuuucu" siRNA in Human Genome sequences

See NC_004102 at Genbank

Pubmed:12740604
Article:Inhibition of intracellular hepatitis C virus replication by synthetic and vector-derived small interfering RNAs.
Authors:Yokota T, Sakamoto N, Enomoto N, Tanabe Y, Miyagishi M, Maekawa S, Yi L, Kurosaki M, Taira K, Watanabe M, Mizusawa H.
Journal:EMBO Rep. 2003 Jun;4(6):602-8.
Entrez:12740604

siRNA sequence "ggucucguagaccgugcac" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ggucucguagaccgugcac" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2157 " record
Length: 19
GC Content:63 %
GenBank Acc: NC_004102
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggucucguagaccgugcac" siRNA in Human Genome sequences

See NC_004102 at Genbank

Pubmed:12740604
Article:Inhibition of intracellular hepatitis C virus replication by synthetic and vector-derived small interfering RNAs.
Authors:Yokota T, Sakamoto N, Enomoto N, Tanabe Y, Miyagishi M, Maekawa S, Yi L, Kurosaki M, Taira K, Watanabe M, Mizusawa H.
Journal:EMBO Rep. 2003 Jun;4(6):602-8.
Entrez:12740604

siRNA sequence "cccgcucaaugcccg/cga" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "cccgcucaaugcccg/cga" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1024 " record
Length: 19
GC Content:68 %
GenBank Acc: AY661552
Transfection Reagent: siPORT Amine/Lipid
Incubation Time (Hours):96

Offtargets for "cccgcucaaugcccg/cga" siRNA in Human Genome sequences

See AY661552 at Genbank

Pubmed:19173711
Article:Consensus siRNA for inhibition of HCV genotype-4 replication.
Authors:Zekri AR, Bahnassy AA, El-Din HM, Salama HM.
Journal:Virol J. 2009 Jan 27;6:13.
Entrez:19173711

siRNA sequence "auuugggcgugcccccgca" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "auuugggcgugcccccgca" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1025 " record
Length: 19
GC Content:68 %
GenBank Acc: AY661552
Transfection Reagent: siPORT Amine/Lipid
Incubation Time (Hours):96

Offtargets for "auuugggcgugcccccgca" siRNA in Human Genome sequences

See AY661552 at Genbank

Pubmed:19173711
Article:Consensus siRNA for inhibition of HCV genotype-4 replication.
Authors:Zekri AR, Bahnassy AA, El-Din HM, Salama HM.
Journal:Virol J. 2009 Jan 27;6:13.
Entrez:19173711

siRNA sequence "ccaacuguaacuuagaagu" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences

siRNA sequence matching with "ccaacuguaacuuagaagu" Human Coxsackievirus [CV]" Virus reference Genome sequences

Browse all the records for "Human Coxsackievirus [CV]" virus

Browse "virsi1815 " record
Length: 19
GC Content:37 %
Starting position: 98
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ccaacuguaacuuagaagu" siRNA in Human Genome sequences

See M33854 at Genbank

Pubmed:18691577
Article:Design of LNA-modified siRNAs against the highly structured 5' UTR of coxsackievirus B3.
Authors:Dutkiewicz M, Grunert HP, Zeichhardt H, Lena SW, Wengel J, Kurreck J.
Journal:FEBS Lett. 2008 Sep 3;582(20):3061-6. Epub 2008 Aug 6.
Entrez:18691577

siRNA sequence "gucucguagaccgugcauca" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "gucucguagaccgugcauca" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1165 " record
Length: 20
GC Content:55 %
Starting position: 325
Strain of Virus: Isolate HCR6
GenBank Acc: AY045702
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "gucucguagaccgugcauca" siRNA in Human Genome sequences

See AY045702 at Genbank

Pubmed:16496015
Article:Intracellular-diced dsRNA has enhanced efficacy for silencing HCV RNA and overcomes variation in the viral genotype.
Authors:Watanabe T, Sudoh M, Miyagishi M, Akashi H, Arai M, Inoue K, Taira K, Yoshiba M, Kohara M.
Journal:Gene Ther. 2006 Jun;13(11):883-92.
Entrez:16496015

siRNA sequence "acacaccgaucaacaguca" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences

siRNA sequence matching with "acacaccgaucaacaguca" Human Coxsackievirus [CV]" Virus reference Genome sequences

Browse all the records for "Human Coxsackievirus [CV]" virus

Browse "virsi1817 " record
Length: 19
GC Content:47 %
Starting position: 120
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "acacaccgaucaacaguca" siRNA in Human Genome sequences

See M33854 at Genbank

Pubmed:18691577
Article:Design of LNA-modified siRNAs against the highly structured 5' UTR of coxsackievirus B3.
Authors:Dutkiewicz M, Grunert HP, Zeichhardt H, Lena SW, Wengel J, Kurreck J.
Journal:FEBS Lett. 2008 Sep 3;582(20):3061-6. Epub 2008 Aug 6.
Entrez:18691577

siRNA sequence "aacuacugucuucacgcagaa" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "aacuacugucuucacgcagaa" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1185 " record
Length: 21
GC Content:43 %
Starting position: 53
Strain of Virus: Genotype 2a
Transfection Reagent: Lipofectamine
Incubation Time (Hours):72

Offtargets for "aacuacugucuucacgcagaa" siRNA in Human Genome sequences

See at Genbank

Pubmed:17079316
Article:Small interfering RNA targeted to hepatitis C virus 5' nontranslated region exerts potent antiviral effect.
Authors:Kanda T, Steele R, Ray R, Ray RB.
Journal:J Virol. 2007 Jan;81(2):669-76. Epub 2006 Nov 1.
Entrez:17079316

siRNA sequence "ccgggaggucucguagaccgugcauca" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ccgggaggucucguagaccgugcauca" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1173 " record
Length: 27
GC Content:63 %
Starting position: 318
Strain of Virus: Isolate HCR6
GenBank Acc: AY045702
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ccgggaggucucguagaccgugcauca" siRNA in Human Genome sequences

See AY045702 at Genbank

Pubmed:16496015
Article:Intracellular-diced dsRNA has enhanced efficacy for silencing HCV RNA and overcomes variation in the viral genotype.
Authors:Watanabe T, Sudoh M, Miyagishi M, Akashi H, Arai M, Inoue K, Taira K, Yoshiba M, Kohara M.
Journal:Gene Ther. 2006 Jun;13(11):883-92.
Entrez:16496015

siRNA sequence "aaaggccuugugguacugccu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "aaaggccuugugguacugccu" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1186 " record
Length: 21
GC Content:52 %
Starting position: 274
Strain of Virus: Genotype 2a
Transfection Reagent: Lipofectamine
Incubation Time (Hours):72

Offtargets for "aaaggccuugugguacugccu" siRNA in Human Genome sequences

See at Genbank

Pubmed:17079316
Article:Small interfering RNA targeted to hepatitis C virus 5' nontranslated region exerts potent antiviral effect.
Authors:Kanda T, Steele R, Ray R, Ray RB.
Journal:J Virol. 2007 Jan;81(2):669-76. Epub 2006 Nov 1.
Entrez:17079316

siRNA sequence "guacugccugauagggugc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "guacugccugauagggugc" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1184 " record
Length: 19
GC Content:58 %
Starting position: 286
Incubation Time (Hours):48

Offtargets for "guacugccugauagggugc" siRNA in Human Genome sequences

See at Genbank

Pubmed:12477890
Article:Small interfering RNA-mediated inhibition of hepatitis C virus replication in the human hepatoma cell line Huh-7.
Authors:Seo MY, Abrignani S, Houghton M, Han JH.
Journal:J Virol. 2003 Jan;77(1):810-2. No abstract available.
Entrez:12477890

siRNA sequence "agcgucuagccauggcguu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "agcgucuagccauggcguu" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1188 " record
Length: 19
GC Content:58 %
Starting position: 74
Strain of Virus: Genotype 1b
Transfection Reagent: FuGENE
Incubation Time (Hours):48

Offtargets for "agcgucuagccauggcguu" siRNA in Human Genome sequences

See at Genbank

Pubmed:17129382
Article:Small interfering RNA targeted to stem-loop II of the 5' untranslated region effectively inhibits expression of six HCV genotypes.
Authors:Prabhu R, Garry RF, Dash S.
Journal:Virol J. 2006 Nov 27;3:100.
Entrez:17129382

siRNA sequence "ggucucguagaccgugcau" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ggucucguagaccgugcau" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1174 " record
Length: 19
GC Content:58 %
Starting position: 324
Strain of Virus: Isolate HCR6
GenBank Acc: AY045702
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggucucguagaccgugcau" siRNA in Human Genome sequences

See AY045702 at Genbank

Pubmed:16496015
Article:Intracellular-diced dsRNA has enhanced efficacy for silencing HCV RNA and overcomes variation in the viral genotype.
Authors:Watanabe T, Sudoh M, Miyagishi M, Akashi H, Arai M, Inoue K, Taira K, Yoshiba M, Kohara M.
Journal:Gene Ther. 2006 Jun;13(11):883-92.
Entrez:16496015

siRNA sequence "cucguagaccgugcauca" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "cucguagaccgugcauca" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1176 " record
Length: 18
GC Content:56 %
Starting position: 327
Strain of Virus: Isolate HCR6
GenBank Acc: AY045702
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "cucguagaccgugcauca" siRNA in Human Genome sequences

See AY045702 at Genbank

Pubmed:16496015
Article:Intracellular-diced dsRNA has enhanced efficacy for silencing HCV RNA and overcomes variation in the viral genotype.
Authors:Watanabe T, Sudoh M, Miyagishi M, Akashi H, Arai M, Inoue K, Taira K, Yoshiba M, Kohara M.
Journal:Gene Ther. 2006 Jun;13(11):883-92.
Entrez:16496015

siRNA sequence "ggaaccgacuacuuugggu" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences

siRNA sequence matching with "ggaaccgacuacuuugggu" Human Coxsackievirus [CV]" Virus reference Genome sequences

Browse all the records for "Human Coxsackievirus [CV]" virus

Browse "virsi1829 " record
Length: 19
GC Content:53 %
Starting position: 536
Strain of Virus: CVB-3
GenBank Acc: M33854
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ggaaccgacuacuuugggu" siRNA in Human Genome sequences

See M33854 at Genbank

Pubmed:18691577
Article:Design of LNA-modified siRNAs against the highly structured 5' UTR of coxsackievirus B3.
Authors:Dutkiewicz M, Grunert HP, Zeichhardt H, Lena SW, Wengel J, Kurreck J.
Journal:FEBS Lett. 2008 Sep 3;582(20):3061-6. Epub 2008 Aug 6.
Entrez:18691577

siRNA sequence "uucuuggaucaacccgcuca" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "uucuuggaucaacccgcuca" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2003 " record
Length: 20
GC Content:50 %
Starting position: 197
Strain of Virus: HCR6
GenBank Acc: AY045702
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "uucuuggaucaacccgcuca" siRNA in Human Genome sequences

See AY045702 at Genbank

Pubmed:16496015
Article:Intracellular-diced dsRNA has enhanced efficacy for silencing HCV RNA and overcomes variation in the viral genotype.
Authors:Watanabe T, Sudoh M, Miyagishi M, Akashi H, Arai M, Inoue K, Taira K, Yoshiba M, Kohara M.
Journal:Gene Ther. 2006 Jun;13(11):883-92.
Entrez:16496015

siRNA sequence "ugaggaacuacugucuucac" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ugaggaacuacugucuucac" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2005 " record
Length: 20
GC Content:45 %
Starting position: 50
Strain of Virus: HCR6
GenBank Acc: AY045702
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ugaggaacuacugucuucac" siRNA in Human Genome sequences

See AY045702 at Genbank

Pubmed:16496015
Article:Intracellular-diced dsRNA has enhanced efficacy for silencing HCV RNA and overcomes variation in the viral genotype.
Authors:Watanabe T, Sudoh M, Miyagishi M, Akashi H, Arai M, Inoue K, Taira K, Yoshiba M, Kohara M.
Journal:Gene Ther. 2006 Jun;13(11):883-92.
Entrez:16496015

VIRsiRNAdb

Database of Viral siRNA / shRNA

Browse BY

VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With
virsi1801	acagccuguggguugaucc	Human Coxsackievirus [CV]	5'UTR	COS-7	Protein	Low	16164410	Blast SL	refseqs
virsi1802	guaacacacaccgaucaac	Human Coxsackievirus [CV]	5'UTR	COS-7	Protein	Low	16164410	Blast SL	refseqs
virsi1803	ggagaaagcguucguuauc	Human Coxsackievirus [CV]	5'UTR	COS-7	Protein	Low	16164410	Blast SL	refseqs
virsi1804	uacagacauggugcgaaga	Human Coxsackievirus [CV]	5'UTR	COS-7	Protein	Low	16164410	Blast SL	refseqs
virsi1805	ccgacuacuuugggugucc	Human Coxsackievirus [CV]	5'UTR	COS-7	Protein	Low	16164410	Blast SL	refseqs
virsi2156	ggccuugugguacugccug	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	Low	12740604	Blast SL	refseqs
virsi2331	aguuguuagucuacguggac	Dengue Virus [DENV]	5'UTR	Huh-7	Plaque Count	High	21795337	Blast SL	refseqs
virsi2154	gcgucuagccauggcguua	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	High	12740604	Blast SL	refseqs
virsi2155	ggacgaccggguccuuucu	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	High	12740604	Blast SL	refseqs
virsi2157	ggucucguagaccgugcac	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	High	12740604	Blast SL	refseqs
virsi1024	cccgcucaaugcccg/cga	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	100	19173711	Blast SL	refseqs
virsi1025	auuugggcgugcccccgca	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	100	19173711	Blast SL	refseqs
virsi1815	ccaacuguaacuuagaagu	Human Coxsackievirus [CV]	5'UTR	COS-7	RNA	92	18691577	Blast SL	refseqs
virsi1165	gucucguagaccgugcauca	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	91	16496015	Blast SL	refseqs
virsi1817	acacaccgaucaacaguca	Human Coxsackievirus [CV]	5'UTR	COS-7	RNA	91	18691577	Blast SL	refseqs
virsi1185	aacuacugucuucacgcagaa	Hepatitis C Virus [HCV]	5'UTR	Huh-7	RNA	90	17079316	Blast SL	refseqs
virsi1173	ccgggaggucucguagaccgugcauca	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	89	16496015	Blast SL	refseqs
virsi1186	aaaggccuugugguacugccu	Hepatitis C Virus [HCV]	5'UTR	Huh-7	RNA	89	17079316	Blast SL	refseqs
virsi1184	guacugccugauagggugc	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	85	12477890	Blast SL	refseqs
virsi1188	agcgucuagccauggcguu	Hepatitis C Virus [HCV]	5'UTR	Huh-7	mRNA	84	17129382	Blast SL	refseqs
virsi1174	ggucucguagaccgugcau	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	81	16496015	Blast SL	refseqs
virsi1176	cucguagaccgugcauca	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	76	16496015	Blast SL	refseqs
virsi1829	ggaaccgacuacuuugggu	Human Coxsackievirus [CV]	5'UTR	COS-7	RNA	75	18691577	Blast SL	refseqs
virsi2003	uucuuggaucaacccgcuca	Hepatitis C Virus [HCV]	5'UTR	R6FLR-N	Protein	74	16496015	Blast SL	refseqs
virsi2005	ugaggaacuacugucuucac	Hepatitis C Virus [HCV]	5'UTR	R6FLR-N	Protein	64	16496015	Blast SL	refseqs