VIRsiRNAdb
Database of Viral siRNA / shRNA
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Family of Virus
Virus Name
Gene Name
Pubmed Id
VsiRNAid
Total number of Results for
HBeAg
are
7
Results from
0 - 25
VIRsiRNAid
siRNA Sequence
Virus_Name
Target Region
Cell Line
Test Object
Efficacy
PMID
Offtarget
Align With
ALIGN0 Result
virsi1032
cgggacguccuuuguuuacgu
Hepatitis B Virus [HBV]
HBeAg
Huh-7
Protein
Low
19159285
Blast
SL
refseqs
     
siRNA sequence "
cgggacguccuuuguuuacgu
" alignment with "
Hepatitis B Virus [HBV]
" virus reference Genome sequences
siRNA sequence matching with "
cgggacguccuuuguuuacgu
"
Hepatitis B Virus [HBV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis B Virus [HBV]
" virus
Browse "
virsi1032
" record
Length:
21
GC Content:
52 %
Starting position:
1410
Transfection Reagent:
siFECTamine
Incubation Time (Hours):
96
Offtargets for "
cgggacguccuuuguuuacgu
" siRNA in Human Genome sequences
See
at Genbank
Pubmed:
19159285
Article:
Controlling HBV replication in vivo by intravenous administration of triggered PEGylated siRNA-nanoparticles.
Authors:
Carmona S, Jorgensen MR, Kolli S, Crowther C, Salazar FH, Marion PL, Fujino M, Natori Y, Thanou M, Arbuthnot P, Miller AD.
Journal:
Mol Pharm. 2009 May-Jun;6(3):706-17.
Entrez:
19159285
virsi1034
ugggggaggagauuagguuaa
Hepatitis B Virus [HBV]
HBeAg
Huh-7
Protein
Low
19159285
Blast
SL
refseqs
     
siRNA sequence "
ugggggaggagauuagguuaa
" alignment with "
Hepatitis B Virus [HBV]
" virus reference Genome sequences
siRNA sequence matching with "
ugggggaggagauuagguuaa
"
Hepatitis B Virus [HBV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis B Virus [HBV]
" virus
Browse "
virsi1034
" record
Length:
21
GC Content:
48 %
Starting position:
1741
Transfection Reagent:
siFECTamine
Incubation Time (Hours):
96
Offtargets for "
ugggggaggagauuagguuaa
" siRNA in Human Genome sequences
See
at Genbank
Pubmed:
19159285
Article:
Controlling HBV replication in vivo by intravenous administration of triggered PEGylated siRNA-nanoparticles.
Authors:
Carmona S, Jorgensen MR, Kolli S, Crowther C, Salazar FH, Marion PL, Fujino M, Natori Y, Thanou M, Arbuthnot P, Miller AD.
Journal:
Mol Pharm. 2009 May-Jun;6(3):706-17.
Entrez:
19159285
virsi1035
agguuaaaggucuuuguauua
Hepatitis B Virus [HBV]
HBeAg
Huh-7
Protein
Low
19159285
Blast
SL
refseqs
     
siRNA sequence "
agguuaaaggucuuuguauua
" alignment with "
Hepatitis B Virus [HBV]
" virus reference Genome sequences
siRNA sequence matching with "
agguuaaaggucuuuguauua
"
Hepatitis B Virus [HBV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis B Virus [HBV]
" virus
Browse "
virsi1035
" record
Length:
21
GC Content:
29 %
Starting position:
1755
Transfection Reagent:
siFECTamine
Incubation Time (Hours):
96
Offtargets for "
agguuaaaggucuuuguauua
" siRNA in Human Genome sequences
See
at Genbank
Pubmed:
19159285
Article:
Controlling HBV replication in vivo by intravenous administration of triggered PEGylated siRNA-nanoparticles.
Authors:
Carmona S, Jorgensen MR, Kolli S, Crowther C, Salazar FH, Marion PL, Fujino M, Natori Y, Thanou M, Arbuthnot P, Miller AD.
Journal:
Mol Pharm. 2009 May-Jun;6(3):706-17.
Entrez:
19159285
virsi1036
aggcuguaggcauaaauuggu
Hepatitis B Virus [HBV]
HBeAg
Huh-7
Protein
Low
19159285
Blast
SL
refseqs
     
siRNA sequence "
aggcuguaggcauaaauuggu
" alignment with "
Hepatitis B Virus [HBV]
" virus reference Genome sequences
siRNA sequence matching with "
aggcuguaggcauaaauuggu
"
Hepatitis B Virus [HBV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis B Virus [HBV]
" virus
Browse "
virsi1036
" record
Length:
21
GC Content:
43 %
Starting position:
1778
Transfection Reagent:
siFECTamine
Incubation Time (Hours):
96
Offtargets for "
aggcuguaggcauaaauuggu
" siRNA in Human Genome sequences
See
at Genbank
Pubmed:
19159285
Article:
Controlling HBV replication in vivo by intravenous administration of triggered PEGylated siRNA-nanoparticles.
Authors:
Carmona S, Jorgensen MR, Kolli S, Crowther C, Salazar FH, Marion PL, Fujino M, Natori Y, Thanou M, Arbuthnot P, Miller AD.
Journal:
Mol Pharm. 2009 May-Jun;6(3):706-17.
Entrez:
19159285
virsi1038
uggucugcgcaccaucaucau
Hepatitis B Virus [HBV]
HBeAg
Huh-7
Protein
Low
19159285
Blast
SL
refseqs
     
siRNA sequence "
uggucugcgcaccaucaucau
" alignment with "
Hepatitis B Virus [HBV]
" virus reference Genome sequences
siRNA sequence matching with "
uggucugcgcaccaucaucau
"
Hepatitis B Virus [HBV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis B Virus [HBV]
" virus
Browse "
virsi1038
" record
Length:
21
GC Content:
52 %
Starting position:
1795
Transfection Reagent:
siFECTamine
Incubation Time (Hours):
96
Offtargets for "
uggucugcgcaccaucaucau
" siRNA in Human Genome sequences
See
at Genbank
Pubmed:
19159285
Article:
Controlling HBV replication in vivo by intravenous administration of triggered PEGylated siRNA-nanoparticles.
Authors:
Carmona S, Jorgensen MR, Kolli S, Crowther C, Salazar FH, Marion PL, Fujino M, Natori Y, Thanou M, Arbuthnot P, Miller AD.
Journal:
Mol Pharm. 2009 May-Jun;6(3):706-17.
Entrez:
19159285
virsi1033
ucgcgggacguccuuuguuua
Hepatitis B Virus [HBV]
HBeAg
Huh-7
Protein
70
19159285
Blast
SL
refseqs
     
siRNA sequence "
ucgcgggacguccuuuguuua
" alignment with "
Hepatitis B Virus [HBV]
" virus reference Genome sequences
siRNA sequence matching with "
ucgcgggacguccuuuguuua
"
Hepatitis B Virus [HBV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis B Virus [HBV]
" virus
Browse "
virsi1033
" record
Length:
21
GC Content:
52 %
Starting position:
1407
Transfection Reagent:
siFECTamine
Incubation Time (Hours):
96
Offtargets for "
ucgcgggacguccuuuguuua
" siRNA in Human Genome sequences
See
at Genbank
Pubmed:
19159285
Article:
Controlling HBV replication in vivo by intravenous administration of triggered PEGylated siRNA-nanoparticles.
Authors:
Carmona S, Jorgensen MR, Kolli S, Crowther C, Salazar FH, Marion PL, Fujino M, Natori Y, Thanou M, Arbuthnot P, Miller AD.
Journal:
Mol Pharm. 2009 May-Jun;6(3):706-17.
Entrez:
19159285
virsi1037
uuggucugcgcaccaucauca
Hepatitis B Virus [HBV]
HBeAg
Huh-7
Protein
60
19159285
Blast
SL
refseqs
     
siRNA sequence "
uuggucugcgcaccaucauca
" alignment with "
Hepatitis B Virus [HBV]
" virus reference Genome sequences
siRNA sequence matching with "
uuggucugcgcaccaucauca
"
Hepatitis B Virus [HBV]
" Virus reference Genome sequences
Browse all the records for "
Hepatitis B Virus [HBV]
" virus
Browse "
virsi1037
" record
Length:
21
GC Content:
52 %
Starting position:
1794
Transfection Reagent:
siFECTamine
Incubation Time (Hours):
96
Offtargets for "
uuggucugcgcaccaucauca
" siRNA in Human Genome sequences
See
at Genbank
Pubmed:
19159285
Article:
Controlling HBV replication in vivo by intravenous administration of triggered PEGylated siRNA-nanoparticles.
Authors:
Carmona S, Jorgensen MR, Kolli S, Crowther C, Salazar FH, Marion PL, Fujino M, Natori Y, Thanou M, Arbuthnot P, Miller AD.
Journal:
Mol Pharm. 2009 May-Jun;6(3):706-17.
Entrez:
19159285
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL
: siRNA seedlocator algorithm