VIRsiRNAdb

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Total number of Results for ORF2, Spike are 7
Results from 0 - 25

siRNA sequence "aagcuccuaauuacacucaac" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "aagcuccuaauuacacucaac" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi2237 " record
Length: 21
GC Content:38 %
Starting position: 21553
Strain of Virus: HKU-66078
GenBank Acc: AY304494
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):36

Offtargets for "aagcuccuaauuacacucaac" siRNA in Human Genome sequences
See AY304494 at Genbank
Pubmed:15259899
Article:Prophylactic and therapeutic effects of small interfering RNA targeting SARS-coronavirus.
Authors:Zheng BJ, Guan Y, Tang Q, Du C, Xie FY, He ML, Chan KW, Wong KL, Lader E, Woodle MC, Lu PY, Li B, Zhong N.
Journal:Antivir Ther. 2004 Jun;9(3):365-74.
Entrez:15259899

siRNA sequence "aagggcuaucaaccuauagau" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "aagggcuaucaaccuauagau" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi2239 " record
Length: 21
GC Content:38 %
Starting position: 22068
Strain of Virus: HKU-66078
GenBank Acc: AY304494
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):36

Offtargets for "aagggcuaucaaccuauagau" siRNA in Human Genome sequences
See AY304494 at Genbank
Pubmed:15259899
Article:Prophylactic and therapeutic effects of small interfering RNA targeting SARS-coronavirus.
Authors:Zheng BJ, Guan Y, Tang Q, Du C, Xie FY, He ML, Chan KW, Wong KL, Lader E, Woodle MC, Lu PY, Li B, Zhong N.
Journal:Antivir Ther. 2004 Jun;9(3):365-74.
Entrez:15259899

siRNA sequence "aaucacagaugcuguugauug" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "aaucacagaugcuguugauug" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi2240 " record
Length: 21
GC Content:38 %
Starting position: 22289
Strain of Virus: HKU-66078
GenBank Acc: AY304494
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):36

Offtargets for "aaucacagaugcuguugauug" siRNA in Human Genome sequences
See AY304494 at Genbank
Pubmed:15259899
Article:Prophylactic and therapeutic effects of small interfering RNA targeting SARS-coronavirus.
Authors:Zheng BJ, Guan Y, Tang Q, Du C, Xie FY, He ML, Chan KW, Wong KL, Lader E, Woodle MC, Lu PY, Li B, Zhong N.
Journal:Antivir Ther. 2004 Jun;9(3):365-74.
Entrez:15259899

siRNA sequence "aaccuuacagaguuguaguac" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "aaccuuacagaguuguaguac" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi2241 " record
Length: 21
GC Content:38 %
Starting position: 22951
Strain of Virus: HKU-66078
GenBank Acc: AY304494
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):36

Offtargets for "aaccuuacagaguuguaguac" siRNA in Human Genome sequences
See AY304494 at Genbank
Pubmed:15259899
Article:Prophylactic and therapeutic effects of small interfering RNA targeting SARS-coronavirus.
Authors:Zheng BJ, Guan Y, Tang Q, Du C, Xie FY, He ML, Chan KW, Wong KL, Lader E, Woodle MC, Lu PY, Li B, Zhong N.
Journal:Antivir Ther. 2004 Jun;9(3):365-74.
Entrez:15259899

siRNA sequence "aagauguuaacugcacugaug" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "aagauguuaacugcacugaug" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi2242 " record
Length: 21
GC Content:38 %
Starting position: 23272
Strain of Virus: HKU-66078
GenBank Acc: AY304494
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):36

Offtargets for "aagauguuaacugcacugaug" siRNA in Human Genome sequences
See AY304494 at Genbank
Pubmed:15259899
Article:Prophylactic and therapeutic effects of small interfering RNA targeting SARS-coronavirus.
Authors:Zheng BJ, Guan Y, Tang Q, Du C, Xie FY, He ML, Chan KW, Wong KL, Lader E, Woodle MC, Lu PY, Li B, Zhong N.
Journal:Antivir Ther. 2004 Jun;9(3):365-74.
Entrez:15259899

siRNA sequence "aagagcuggacaaguacuuca" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "aagagcuggacaaguacuuca" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi2243 " record
Length: 21
GC Content:43 %
Starting position: 24871
Strain of Virus: HKU-66078
GenBank Acc: AY304494
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):36

Offtargets for "aagagcuggacaaguacuuca" siRNA in Human Genome sequences
See AY304494 at Genbank
Pubmed:15259899
Article:Prophylactic and therapeutic effects of small interfering RNA targeting SARS-coronavirus.
Authors:Zheng BJ, Guan Y, Tang Q, Du C, Xie FY, He ML, Chan KW, Wong KL, Lader E, Woodle MC, Lu PY, Li B, Zhong N.
Journal:Antivir Ther. 2004 Jun;9(3):365-74.
Entrez:15259899

siRNA sequence "aauguuacaggguuucauacu" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "aauguuacaggguuucauacu" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi2238 " record
Length: 21
GC Content:33 %
Starting position: 21669
Strain of Virus: HKU-66078
GenBank Acc: AY304494
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):36

Offtargets for "aauguuacaggguuucauacu" siRNA in Human Genome sequences
See AY304494 at Genbank
Pubmed:15259899
Article:Prophylactic and therapeutic effects of small interfering RNA targeting SARS-coronavirus.
Authors:Zheng BJ, Guan Y, Tang Q, Du C, Xie FY, He ML, Chan KW, Wong KL, Lader E, Woodle MC, Lu PY, Li B, Zhong N.
Journal:Antivir Ther. 2004 Jun;9(3):365-74.
Entrez:15259899


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi2237	aagcuccuaauuacacucaac	SARS Coronavirus	ORF2, Spike	FRhK-4	Viral Titer	High	15259899	Blast SL	refseqs
virsi2239	aagggcuaucaaccuauagau	SARS Coronavirus	ORF2, Spike	FRhK-4	Viral Titer	High	15259899	Blast SL	refseqs
virsi2240	aaucacagaugcuguugauug	SARS Coronavirus	ORF2, Spike	FRhK-4	Viral Titer	High	15259899	Blast SL	refseqs
virsi2241	aaccuuacagaguuguaguac	SARS Coronavirus	ORF2, Spike	FRhK-4	Viral Titer	High	15259899	Blast SL	refseqs
virsi2242	aagauguuaacugcacugaug	SARS Coronavirus	ORF2, Spike	FRhK-4	Viral Titer	High	15259899	Blast SL	refseqs
virsi2243	aagagcuggacaaguacuuca	SARS Coronavirus	ORF2, Spike	FRhK-4	Viral Titer	High	15259899	Blast SL	refseqs
virsi2238	aauguuacaggguuucauacu	SARS Coronavirus	ORF2, Spike	FRhK-4	Viral Titer	60	15259899	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm