siRNA Datasets Used In this Algorithm:
1.VIRsiRNAdb (783)
2.HIVsirDB (240)
3.Patent (1204)
4.Unique (1725)
5.Training (1380)
6.Validation (345)
| siRNA ID | Sequence | Virus | PMID/Patent | Efficacy |
|---|---|---|---|---|
| 1160 | aaaaggggggauugggggg | HIV | 16959541 | 13 |
| ND-9127 | aaaaguaauaaaucaacgu | HPV | US20110230546A1 | 15.05 |
| ND-8959 | aaacaacuauacaugauau | HPV | US20110230546A1 | 36.37 |
| virsi2199 | aaagcacucuagcgaacaa | West Nile Virus [WNV] | 19135091 | 90 |
| AD-14874 | aaagugcugaauagggagg | JCV | US08058257 | -1.77 |
| A18666 | aaaguuacaagugccugug | Ebola Zaire virus | US 7759320 | -44.3 |
| PAT415 | aaauacuaggaaugcuuca | RSV | EP1833490A2 | 98 |
| AL-DP-8083 | aaauccuuuuucucaagga | HPV | US20110230546A1 | 13.25 |
| PAT472 | aaauuccuagaaucaauaa | RSV | EP1833490A2 | 3 |
| 1211 | aagaaaaggggggacugga | HIV | 17331227 | 98 |
| 1409 | aagaaaugaugacagcaug | HIV | 19384894 | 15 |
| 1559 | aagaauccguauccagaga | HIV | 17173982 | 88 |
| A18490 | aagauuaaaaccuucauca | Ebola Zaire virus | US 7759320 | 79.8 |
| AD-14883 | aagguagaagacccuaaag | JCV | US08058257 | 59.38 |
| 1178 | aaggugaaggggcaguagu | HIV | 16959541 | 76 |
| ND-9085 | aaguauuuggguaguccac | HPV | US20110230546A1 | 44.27 |
| ND-9065 | aaucaacguguugcgauug | HPV | US20110230546A1 | 31.42 |
| PAT35 | aauccugucaccucugacu | Influenza | WO 2007/053696 A2 | -36 |
| 1147 | acaauuuuaaaagaaaagg | HIV | 16959541 | -4 |
| PAT475 | acagucaguaguagaccau | RSV | EP1833490A2 | 24 |
| ND-9091 | acauaguagacgauaguga | HPV | US20110230546A1 | 68.65 |
| PAT112 | accgugcccagugagcgag | Influenza | WO 2007/053696 A2 | 22 |
| virsi2165 | acgggacgaugaggaucuu | Hepatitis C Virus [HCV] | 12951263 | 70 |
| ND-9086 | acguguugcgauuggugua | HPV | US20110230546A1 | 71.1 |
| PAT181 | acuuacugacagccagaca | Influenza | WO 2007/053696 A2 | 17 |
| 1158 | agaaaaggggggauugggg | HIV | 16959541 | 24 |
| AD-14831 | agaaacuacuugggcaaua | JCV | US08058257 | 45.22 |
| 1130 | agaagaaaugaugacagca | HIV | 16959541 | 64 |
| AD-14913 | agaagacccuaaagacuuu | JCV | US08058257 | 40.2 |
| PAT98 | agacaagaccaauccuguc | Influenza | WO 2007/053696 A2 | 5 |
| 1124 | agagaugggugcgagagcg | HIV | 16959541 | 83 |
| virsi1285 | agauacaauugucguuacu | SARS Coronavirus | 16894145 | 85 |
| A18492 | agauuaaaaccuucaucau | Ebola Zaire virus | US 7759320 | -15.4 |
| ND-9071 | agauuaaguuugcacgagg | HPV | US20110230546A1 | 69.32 |
| ND-8913 | agauuccauaauauaaggg | HPV | US20110230546A1 | 23.37 |
| ND-9113 | agcauagaccauugguaca | HPV | US20110230546A1 | 68.31 |
| 1436 | agccaccccacaagauuua | HIV | 19497094 | 85.3 |
| PAT191 | agccagacagcgaccaaaa | Influenza | WO 2007/053696 A2 | 73 |
| AD-14852 | agccugauuuugguacaug | JCV | US08058257 | 32.02 |
| virsi1407 | agcgcacaaggaaggcgug | Japanese Encephalitis Virus [JE] | 16791421 | 60 |
| virsi2306 | aggagguuuggcggaacag | Yellow Fever Virus | 19169857 | 12 |
| virsi2288 | aggcaguccucaacuauaa | Hazara Nairovirus | 21600011 | 92 |
| virsi2065 | agggauaaugaaggcugcu | Reovirus | 16940517 | 21 |
| AD-14865 | agguagaagacccuaaaga | JCV | US08058257 | 73.75 |
| virsi1182 | aggucucguagaccgugca | Hepatitis C Virus [HCV] | 16872906 | 82 |
| AD-14860 | aguaagggcguggaggcuu | JCV | US08058257 | 37.22 |
| virsi1200 | agucacggcuagcugugaa | Hepatitis C Virus [HCV] | 17305886 | 68 |
| PAT121 | agugagcgaggacugcagc | Influenza | WO 2007/053696 A2 | -22 |
| ND-8970 | agugaguauagacauuauu | HPV | US20110230546A1 | 70.86 |
| virsi2046 | aguuccucuaacuucuuuc | Hepatitis Delta Virus [HDV] | 12915586 | 8 |
| ND-9084 | auaaugacauaguagacga | HPV | US20110230546A1 | 55.72 |
| PAT438 | auagaacaacaaauuauca | RSV | EP1833490A2 | 91 |
| PAT451 | auauagaaccuacauaucc | RSV | EP1833490A2 | 87 |
| AL-DP-8085 | auccuuuuucucaaggacg | HPV | US20110230546A1 | -12.33 |
| PAT197 | aucgugccuuccuuugaca | Influenza | WO 2007/053696 A2 | 82 |
| virsi1502 | augaagagcaggacaaaag | Dengue Virus [DENV] | 20015996 | 71 |
| A18482 | augaagauuaaaaccuuca | Ebola Zaire virus | US 7759320 | 62.7 |
| PAT49 | augagucuucuaaccgagg | Influenza | WO 2007/053696 A2 | 10 |
| ND-9120 | augauuauuuaacacaggc | HPV | US20110230546A1 | 29.02 |
| virsi1772 | augcgccagcuaaaaccaa | Enterovirus [EV] | 18428147 | 100 |
| PAT86 | auggauucgaaccgaacgg | Influenza | WO 2007/053696 A2 | 19 |
| AL-DP-8070 | auuaguaagaccauuuaaa | HPV | US20110230546A1 | 39.58 |
| A18664 | auuauaauccaccacauaa | Ebola Zaire virus | US 7759320 | 2.2 |
| virsi1843 | auugaaggaauguauggac | Human Coxsackievirus [CV] | 20214933 | 67 |
| AD-14764 | auugcaucccuugcuacug | JCV | US08058257 | 25.96 |
| virsi1503 | auuggauacagaaagagac | Dengue Virus [DENV] | 20015996 | 0 |
| virsi1025 | auuugggcgugcccccgca | Hepatitis C Virus [HCV] | 19173711 | 100 |
| PAT55 | caaaaugcuauaaguacca | Influenza | WO 2007/053696 A2 | -65 |
| virsi2290 | caaagaccaagucgaccaa | Hazara Nairovirus | 21600011 | 18 |
| virsi2214 | caacauagagcuagaguaa | Influenza A Virus | 20060420 | 78 |
| AL-DP-8045 | caacguuuaaauguguguc | HPV | US20110230546A1 | -20.81 |
| AL-DP-8074 | caauacugaaguggaaacu | HPV | US20110230546A1 | 52.03 |
| A18576 | caaucaguaggacacauga | Ebola Zaire virus | US 7759320 | 20.7 |
| ND-9124 | caccauguagucaguauag | HPV | US20110230546A1 | 69.53 |
| PAT41 | caccgugcccagugagcga | Influenza | WO 2007/053696 A2 | -52 |
| virsi1734 | cagaaaaacuuagacaccu | Human Papillomavirus [HPV] | 16810314 | 0 |
| virsi2297 | cagagaaauugcugauaua | Hazara Nairovirus | 21600011 | 0 |
| virsi2037 | cagagcagcugauacuaac | Human Rhinovirus | 14670593 | 80 |
| virsi1539 | cagauugcugacucccagc | Influenza A Virus | 12594334 | 75 |
| virsi1640 | cagcagagugcuguggaug | Influenza A Virus | 17719657 | 92 |
| virsi2034 | caggagcaccuauaccaac | Human Rhinovirus | 14670593 | 77 |
| virsi1545 | caggauacaccauggauac | Influenza A Virus | 12594334 | 0 |
| New_19 | caggcagcguggucauugu | HCV | WO 2006/129961 A1 | 50 |
| PAT139 | caggcccccucaaagccga | Influenza | WO 2007/053696 A2 | -14 |
| PAT482 | cagucaguaguagaccaug | RSV | EP1833490A2 | 15 |
| virsi2291 | cagucaugauggugguuua | Hazara Nairovirus | 21600011 | 38 |
| PAT455 | caguguagguagaauguuu | RSV | EP1833490A2 | 86 |
| virsi1415 | caguucucgaguucaucuu | Marburg Virus | 15784912 | 70 |
| AD-14800 | caucccuugcuacuguaga | JCV | US08058257 | 66.74 |
| ND-9116 | ccaaaauugcguaguacag | HPV | US20110230546A1 | 43.65 |
| virsi1973 | ccaaauacaucauggcaug | Hepatitis C Virus [HCV] | 20464448 | 60 |
| PAT368 | ccaagauuuaugaguguaa | Metapneumovirus | US 2010/0254945 A1 | 79.1 |
| virsi1660 | ccaaguggcuaugcccaaa | Influenza A Virus | 19089690 | 75 |
| AD-14843 | ccagaagacuacuaugaua | JCV | US08058257 | 76.25 |
| ND-9104 | ccagauuaaguuugcacga | HPV | US20110230546A1 | 70.39 |
| virsi1906 | ccauagccaauccaugacc | Herpes Simplex Virus [HSV] | 18551244 | 69 |
| New_3 | cccgcucaaugccuggaga | HCV | WO 2006/129961 A1 | 0 |
| PAT216 | cccgucaggcccccucaaa | Influenza | WO 2007/053696 A2 | 14 |
| PAT14 | cccucaaagccgagaucgc | Influenza | WO 2007/053696 A2 | -24 |
| PAT160 | cccuggguuuugcuuaaug | Influenza | WO 2007/053696 A2 | 100 |
| virsi2351 | ccgacaaacacaccaauuu | Herpes Simplex Virus [HSV] | 21331889 | 63 |
| virsi1525 | ccgaggucgaaacguacgu | Influenza A Virus | 12594334 | 50 |
| virsi1821 | ccggccaacuacuucgaaa | Human Coxsackievirus [CV] | 18691577 | 0 |
| AD-14804 | ccuaguugcuacuguuucu | JCV | US08058257 | 69.92 |
| PAT377 | ccuaucauuaguagguuau | Metapneumovirus | US 2010/0254945 A1 | -18.6 |
| virsi1075 | ccuccuguccuccaacuug | Hepatitis B Virus [HBV] | 15756649 | 49 |
| PAT367 | ccucuauuaccaagauuua | Metapneumovirus | US 2010/0254945 A1 | 30.4 |
| virsi2299 | ccugauaaccugcaaugau | Junin Virus | 19591878 | 85 |
| virsi1057 | ccugcacgacuccugcuca | Hepatitis B Virus [HBV] | 16153600 | 7 |
| virsi1947 | ccugcucuuggacugcaug | Measles Virus | 18394725 | 43 |
| 197 | ccugggaaaugcagagaua | RSV | US20100254945A1 | 63.026023 |
| virsi2043 | ccuugauguuagauggaga | Human Rhinovirus | 14670593 | 94 |
| 1606 | ccuuggguucuuaggagcu | HIV | 15894278 | 64.6 |
| New_47 | cgaaagacuguagaagcua | orthopoxvirus | 18572748 | 90 |
| virsi1431 | cgacggacucaaaggauua | Reovirus | 16940517 | 97 |
| PAT30 | cgaggucgaaacguacguu | Influenza | WO 2007/053696 A2 | -25 |
| New_52 | cgaguaugugugugcggua | orthopoxvirus | 18572748 | 0 |
| PAT383 | cgauuaauuaggaagaaau | Metapneumovirus | US 2010/0254945 A1 | -5.6 |
| virsi1671 | cgcccaccgaauguugccc | Hepatitis B Virus [HBV] | 16353167 | 88 |
| New_65 | cgcuugugcgcaaauuuug | ASFV | 20710054 | 35 |
| New_56 | cggaucauuauuuaccgaa | orthopoxvirus | 18572748 | 50 |
| PAT167 | cgggacucuagcauacuua | Influenza | WO 2007/053696 A2 | 36 |
| PAT211 | cggggagucuucgagcucu | Influenza | WO 2007/053696 A2 | 55 |
| virsi2024 | cgguaaucuuguacgccag | Human Rhinovirus | 14670593 | 6 |
| ND-8901 | cgguggaccggucgaugua | HPV | US20110230546A1 | 75.23 |
| PAT24 | cgguuugaaaagagggccu | Influenza | WO 2007/053696 A2 | 1 |
| virsi1729 | cuaacacuggguuauacaa | Human Papillomavirus [HPV] | 15908516 | 60 |
| virsi2286 | cuaaugacucuagcuaccu | Hepatitis B Virus [HBV] | 17926641 | 79 |
| AD-14772 | cuacuauagaaguugaaau | JCV | US08058257 | 66.88 |
| 1023 | cuagagcccuggaagcauc | HIV | 12438622 | 90 |
| PAT174 | cuagcauacuuacugacag | Influenza | WO 2007/053696 A2 | 48 |
| PAT7 | cucaaagccgagaucgcgc | Influenza | WO 2007/053696 A2 | -95 |
| PAT440 | cucaguguagguagaaugu | RSV | EP1833490A2 | 90 |
| virsi2045 | cuccuaagacaugaauggu | Human Rhinovirus | 14670593 | 71 |
| virsi2058 | cucgacuuaucguccccau | Hepatitis Delta Virus [HDV] | 12915586 | 30 |
| virsi1727 | cugaacacuucacugcaag | Human Papillomavirus [HPV] | 15908516 | 50 |
| A18618 | cugccugcugcaacaugga | Ebola Zaire virus | US 7759320 | 5.6 |
| AL-DP-7810 | cugcgacgugagguauaug | HPV | US20110230546A1 | 62.34 |
| virsi1946 | cugcucuuggacugcauga | Measles Virus | 18394725 | 28 |
| PAT468 | cugucauccagcaaauaca | RSV | EP1833490A2 | 5 |
| 1195 | cuuuuuaaaagaaaagggg | HIV | 16959541 | 54 |
| AL-DP-8047 | gaaaacgauggagacucuu | HPV | US20110230546A1 | 33.73 |
| A18630 | gaaaacugcuacaaucuug | Ebola Zaire virus | US 7759320 | 14.3 |
| virsi1369 | gaaauucaacuccuggcag | SARS Coronavirus | 15848179 | 54 |
| New_82 | gaacuuucuuaucgccagc | MV | 22052457 | 80 |
| A18486 | gaagauuaaaaccuucauc | Ebola Zaire virus | US 7759320 | 73 |
| virsi1553 | gaagcaggaauaccaagag | Influenza B Virus | 16856616 | 9 |
| virsi2044 | gaagccauagccaaggaag | Human Rhinovirus | 14670593 | 66 |
| New_28 | gaaggucaccuuugacaga | HCV | WO 2006/129961 A1 | 55 |
| AL-DP-8079 | gaaguggaaacucagcaga | HPV | US20110230546A1 | 67.73 |
| AD-14799 | gaaguugaaauugcauccc | JCV | US08058257 | 33.17 |
| AD-14757 | gaauguuggguuccugauc | JCV | US08058257 | 60.84 |
| virsi2174 | gacaaaugcagaugcuggc | Rotavirus | 15914838 | 75 |
| ND-9117 | gacagcacaugcguuguuu | HPV | US20110230546A1 | 66.21 |
| ND-9082 | gacauaguagacgauagug | HPV | US20110230546A1 | 51.33 |
| PAT103 | gaccaauccugucaccucu | Influenza | WO 2007/053696 A2 | 2 |
| PAT214 | gacgauggucauuuuguca | Influenza | WO 2007/053696 A2 | 23 |
| virsi1459 | gacuacugccucacccaua | Hepatitis B Virus [HBV] | 14592428 | 85 |
| virsi1191 | gacugcuagccgaguagcg | Hepatitis C Virus [HCV] | 17129382 | 61 |
| 1530 | gacugcugacaucgagcuu | HIV | 19771207 | 0 |
| virsi1485 | gacuucggcuuuggcauca | Japanese Encephalitis Virus [JE] | 16791421 | 90 |
| ND-8926 | gacuuugcuuuucgggauu | HPV | US20110230546A1 | 80.96 |
| virsi1833 | gagagaucguuaccauaua | Human Coxsackievirus [CV] | 18691577 | 0 |
| PAT226 | gagagauucuuuacacuaa | Metapneumovirus | US 2010/0254945 A1 | 27.6 |
| PAT230 | gagauagggauacaauaua | Metapneumovirus | US 2010/0254945 A1 | 36.8 |
| 1623 | gagaucaggcugaacaucu | HIV | 17592732 | 95 |
| virsi1437 | gaggacucuuggacucuca | Hepatitis B Virus [HBV] | 16443303 | 96 |
| PAT125 | gaggacugcagcguagacg | Influenza | WO 2007/053696 A2 | 20 |
| PAT157 | gaucccuggguuuugcuua | Influenza | WO 2007/053696 A2 | 96 |
| New_43 | gauccgggcuauuacauuu | orthopoxvirus | 18572748 | 0 |
| PAT196 | gaucgugccuuccuuugac | Influenza | WO 2007/053696 A2 | 86 |
| PAT483 | gaugaacaaaguggauuau | RSV | EP1833490A2 | 11 |
| virsi1435 | gaugaauugcuugacgcug | Reovirus | 16940517 | 76 |
| 1574 | gauuguacugagagacagg | HIV | 15831707 | 91 |
| virsi1257 | gcaaaucagcuaaagcaau | Human Coxsackievirus [CV] | 18662724 | 41 |
| A18642 | gcaaauccaacggcugaug | Ebola Zaire virus | US 7759320 | 7.7 |
| virsi1313 | gcaaugucaacgaccgacc | Hepatitis B Virus [HBV] | 16022904 | 77 |
| virsi1534 | gcaauugaggagugccuga | Influenza A Virus | 12594334 | 99 |
| PAT4 | gcaccaaacgaucuuauga | Influenza | WO 2007/053696 A2 | 74 |
| virsi1277 | gcacugcaacuuuggucua | Human Coxsackievirus [CV] | 18662724 | 43 |
| PAT126 | gcacuugauauuguggauu | Influenza | WO 2007/053696 A2 | 4 |
| virsi1356 | gcacuugucuaccuugaug | SARS Coronavirus | 14645307 | 93 |
| PAT324 | gcagcaugaaauaaugaaa | Metapneumovirus | US 2010/0254945 A1 | 10.7 |
| PAT177 | gcauacuuacugacagcca | Influenza | WO 2007/053696 A2 | 65 |
| ND-9108 | gcauagaccauugguacaa | HPV | US20110230546A1 | 65.31 |
| virsi1275 | gcaucauaaccauauggua | Human Coxsackievirus [CV] | 18662724 | 81 |
| A18654 | gcaugucagugauuauuau | Ebola Zaire virus | US 7759320 | 22.9 |
| PAT272 | gccagaagcuuaaaagaaa | Metapneumovirus | US 2010/0254945 A1 | 25.6 |
| New_31 | gccagacaggccauaaggu | HCV | WO 2006/129961 A1 | 30 |
| New_30 | gccagcucgccuuaucgua | HCV | WO 2006/129961 A1 | 20 |
| virsi2153 | gcccccgauugggggcgac | Hepatitis C Virus [HCV] | 12740604 | 0 |
| 1021 | gcccuaucccuuuacguca | HIV | 12438622 | 55 |
| New_23 | gccuucugggcgaagcaua | HCV | WO 2006/129961 A1 | 40 |
| PAT359 | gcgacuaguucucauuuaa | Metapneumovirus | US 2010/0254945 A1 | 81.4 |
| virsi1005 | gcguauacacugaugcuua | Sendai Virus | 18093677 | 80 |
| PAT365 | gcuaagaagauugcucaau | Metapneumovirus | US 2010/0254945 A1 | 16.6 |
| 142 | gcuaagguaacaagugaua | RSV | US20100254945A1 | 1.8973635 |
| virsi2106 | gcuauacacuauagcagaa | Human Metapneumovirus | 18839783 | 30 |
| PAT311 | gcuauagucuacauaacau | Metapneumovirus | US 2010/0254945 A1 | 70.1 |
| virsi1119 | gcucaaggaaccucuaugu | Hepatitis B Virus [HBV] | 19026173 | 65 |
| PAT40 | gcucaccgugcccagugag | Influenza | WO 2007/053696 A2 | -34 |
| virsi2013 | gcucaguuuacuagugcca | Hepatitis B Virus [HBV] | 16022904 | 20 |
| virsi1996 | gcucccgcgugucuuggcc | Hepatitis B Virus [HBV] | 16022904 | 83 |
| PAT300 | gcucccucuuguucagaaa | Metapneumovirus | US 2010/0254945 A1 | -6.9 |
| A18624 | gcugaaaacugcuacaauc | Ebola Zaire virus | US 7759320 | 9 |
| 52 | gcugaauugaagcaaguua | RSV | US20100254945A1 | 4.2925512 |
| New_59 | gcuuauagagugcaucgaa | ASFV | 20710054 | 75 |
| PAT259 | gcuuuaggcucaucuucaa | Metapneumovirus | US 2010/0254945 A1 | -3 |
| PAT269 | gcuuuuacaucuaagacaa | Metapneumovirus | US 2010/0254945 A1 | 0.3 |
| 1185 | ggaaaacagauggcaggug | HIV | 16959541 | 32 |
| virsi2090 | ggaaacacuggcuucauua | Human Metapneumovirus | 18839783 | 44 |
| 1094 | ggaaagcuaaggacugguu | HIV | 15851006 | 87 |
| 1175 | ggaaaggugaaggggcagu | HIV | 16959541 | 35 |
| AL-DP-8091 | ggaaauccuuuuucucaag | HPV | US20110230546A1 | 52.72 |
| PAT411 | ggaaaugcagagauaaaaa | Metapneumovirus | US 2010/0254945 A1 | 24.4 |
| virsi3004 | ggaacagaagagcgaacau | Human Coxsackievirus [CV] | 18793610 | 25 |
| PAT341 | ggaagaaugauaguuacaa | Metapneumovirus | US 2010/0254945 A1 | -41.2 |
| 67 | ggaagaggaaaugaaucaa | RSV | US20100254945A1 | 6.0792778 |
| PAT292 | ggacuaaaggaaaguuauu | Metapneumovirus | US 2010/0254945 A1 | -12.9 |
| virsi1512 | ggagacgugguguugguaa | Influenza A Virus | 12594334 | 87 |
| 1120 | ggagagagaugggugcgag | HIV | 16959541 | 93 |
| 1108 | ggagagcaauggcuaguga | HIV | 16840344 | 78 |
| PAT382 | ggagcuaguugaaauuaaa | Metapneumovirus | US 2010/0254945 A1 | -17.2 |
| virsi1488 | ggagugucuggagcaacau | West Nile Virus [WNV] | 18360908 | 65 |
| virsi1571 | ggaguuggacuugacccuu | Influenza B Virus | 16856616 | 82 |
| PAT285 | ggauaacaaucaaggagaa | Metapneumovirus | US 2010/0254945 A1 | -7.5 |
| PAT432 | ggaucccauuauuaaugga | RSV | EP1833490A2 | 92 |
| AD-14947 | ggaugaagaccuguuuugc | JCV | US08058257 | 57.9 |
| virsi2330 | ggauggagcuuaagagaaa | Dengue Virus [DENV] | 21795337 | 0 |
| AL-DP-8086 | ggcaauacugaaguggaaa | HPV | US20110230546A1 | 60.16 |
| 1576 | ggcacuuaucugggacgau | HIV | 15831707 | 75 |
| virsi1063 | ggcagccuacucccaucuc | Hepatitis B Virus [HBV] | 16153600 | 12 |
| PAT141 | ggcccccucaaagccgaga | Influenza | WO 2007/053696 A2 | -29 |
| New_4 | ggcgacaaccuauccccaa | HCV | WO 2006/129961 A1 | 40 |
| 1596 | ggcuagaaggagagagaug | HIV | 14963165 | 0 |
| PAT281 | ggcuagacuagaaucaaua | Metapneumovirus | US 2010/0254945 A1 | -6.4 |
| PAT233 | ggcucuaggaucagaaaga | Metapneumovirus | US 2010/0254945 A1 | 46.1 |
| 42 | gggaaagcuuuaggcucau | RSV | US20100254945A1 | 32.859839 |
| 184 | gggacuugauacacagaau | RSV | US20100254945A1 | 63.941057 |
| 169 | gggagcuaguugaaauuaa | RSV | US20100254945A1 | 47.179666 |
| virsi2086 | gggauaacaccagcaauau | Human Metapneumovirus | 18839783 | 18 |
| virsi1828 | gggcaacucugcagcggaa | Human Coxsackievirus [CV] | 18691577 | 39 |
| virsi1180 | ggggggaagacaucucauc | Hepatitis C Virus [HCV] | 15977238 | 80 |
| 59 | ggguaaugaagcagcaaaa | RSV | US20100254945A1 | 94.352372 |
| 25 | ggguagaagaaauagacaa | RSV | US20100254945A1 | 35.483791 |
| AL-DP-8044 | ggguauggcaauacugaag | HPV | US20110230546A1 | 71.4 |
| PAT356 | gguacaaagucuauaacua | Metapneumovirus | US 2010/0254945 A1 | -4.6 |
| virsi2126 | gguacauguucgagaguaa | Influenza A Virus | 20060420 | 83 |
| ND-9072 | gguaucaagguguagaguu | HPV | US20110230546A1 | 75.62 |
| 47 | ggucaaacaaugcuaaggu | RSV | US20100254945A1 | 42.181926 |
| virsi1790 | gguccaagagagugaauac | Human Coxsackievirus [CV] | 15681418 | 92 |
| ND-8900 | ggucgguggaccggucgau | HPV | US20110230546A1 | 73.2 |
| virsi1274 | ggucgucuaaugcuaguga | Human Coxsackievirus [CV] | 18662724 | 84 |
| virsi1044 | ggucuuacauaagaggacu | Hepatitis B Virus [HBV] | 17054586 | 27 |
| PAT406 | ggugaauuaaacuaugauu | Metapneumovirus | US 2010/0254945 A1 | -0.4 |
| PAT327 | gguuuaguaacugguauaa | Metapneumovirus | US 2010/0254945 A1 | -58.4 |
| virsi1558 | gguuuccucauaaagagaa | Influenza B Virus | 16856616 | 35 |
| AD-14775 | guaaaaccuggaguggaac | JCV | US08058257 | 53.41 |
| ND-9130 | guaaagcauagaccauugg | HPV | US20110230546A1 | 48.46 |
| A18588 | guaggacacaugaugguga | Ebola Zaire virus | US 7759320 | -8.2 |
| PAT220 | gucauauaaacaugcuaua | Metapneumovirus | US 2010/0254945 A1 | 2.8 |
| PAT443 | guccacuacuagagcauau | RSV | EP1833490A2 | 89 |
| virsi1770 | gucuagauugauugaagcu | Enterovirus [EV] | 18428147 | 97 |
| virsi1077 | gucuguacagcaucuugag | Hepatitis B Virus [HBV] | 15756649 | 78 |
| PAT59 | gucuuacauaaaucggaca | Influenza | WO 2007/053696 A2 | -31 |
| virsi1053 | gugaacgcccaccgaaugu | Hepatitis B Virus [HBV] | 18201553 | 75 |
| AD-14861 | gugacuuaacccaagaagc | JCV | US08058257 | 12.53 |
| PAT122 | gugagcgaggacugcagcg | Influenza | WO 2007/053696 A2 | -17 |
| virsi1551 | gugcugaagacauaggaac | Influenza B Virus | 16856616 | 49 |
| PAT82 | guggauggauucgaaccga | Influenza | WO 2007/053696 A2 | 59 |
| PAT46 | guggauucuugaucgucuu | Influenza | WO 2007/053696 A2 | -50 |
| ND-8947 | gugugauuuguuaauuagg | HPV | US20110230546A1 | 46.42 |
| ND-8915 | guuaauuagguguauuaac | HPV | US20110230546A1 | 6.62 |
| AD-14747 | guugaauguuggguuccug | JCV | US08058257 | 67.33 |
| PAT237 | guugcaaauguuagauaua | Metapneumovirus | US 2010/0254945 A1 | 7 |
| virsi1265 | guuggagaaccaaaucuca | Human Coxsackievirus [CV] | 18662724 | 85 |
| AD-14792 | guuuucagguucaugggug | JCV | US08058257 | 61.78 |
| virsi1971 | uacaccuccaccaaaacau | Hepatitis C Virus [HCV] | 21161551 | 74 |
| PAT22 | uacgguuugaaaagagggc | Influenza | WO 2007/053696 A2 | -6 |
| New_38 | uacuaaucgucuagaguua | orthopoxvirus | 18572748 | 0 |
| AD-14803 | uacuauagaaguugaaauu | JCV | US08058257 | 65.85 |
| virsi1078 | uauacaucguuuccauggc | Hepatitis B Virus [HBV] | 15756649 | 42 |
| virsi2301 | uaucuaccauguagacugc | Junin Virus | 19591878 | 50 |
| ND-8968 | uaugcauaguauauagaga | HPV | US20110230546A1 | 71.78 |
| virsi1899 | uaugugguuauacguaaac | Herpes Simplex Virus [HSV] | 16306938 | 52 |
| ND-8964 | uauuaacugucaaaagcca | HPV | US20110230546A1 | 56.26 |
| A18662 | uauuauaauccaccacaua | Ebola Zaire virus | US 7759320 | -39.4 |
| PAT71 | uauuucuucggagacaaug | Influenza | WO 2007/053696 A2 | -20 |
| 1167 | ucaaaauuuucggguuuau | HIV | 16959541 | 26 |
| PAT47 | ucaaaugcauuuaucgucg | Influenza | WO 2007/053696 A2 | -11 |
| AD-14943 | ucaaauuuuauauaagaaa | JCV | US08058257 | 10.04 |
| virsi2052 | ucaaccuccugaguuccuc | Hepatitis Delta Virus [HDV] | 12915586 | 90 |
| PAT458 | ucaguguagguagaauguu | RSV | EP1833490A2 | 84 |
| AD-14844 | uccagaagacuacuaugau | JCV | US08058257 | 72.53 |
| virsi2030 | uccaugugcacugccuugg | Human Rhinovirus | 14670593 | 0 |
| PAT413 | uccuagaaucaauaaaggg | RSV | EP1833490A2 | 98 |
| virsi2054 | uccuauggaaaucccuggu | Hepatitis Delta Virus [HDV] | 12915586 | 70 |
| PAT36 | uccugucaccucugacuaa | Influenza | WO 2007/053696 A2 | -10 |
| PAT426 | ucuaccauauauugaacaa | RSV | EP1833490A2 | 96 |
| New_27 | ucuaccgugucuucugccu | HCV | WO 2006/129961 A1 | 15 |
| virsi1065 | ucuccgcgaggacugggga | Hepatitis B Virus [HBV] | 16153600 | 11 |
| 1172 | ucuggaaaggugaaggggc | HIV | 16959541 | 16 |
| virsi1233 | ucugugacauuggagaguc | West Nile Virus [WNV] | 21423625 | 26 |
| New_13 | ucuugcucgccauacucgg | HCV | WO 2006/129961 A1 | 30 |
| A18484 | ugaagauuaaaaccuucau | Ebola Zaire virus | US 7759320 | 63.5 |
| PAT187 | ugacagccagacagcgacc | Influenza | WO 2007/053696 A2 | -155 |
| ND-8937 | ugaguauagacauuauugu | HPV | US20110230546A1 | 57.3 |
| PAT20 | ugcacuugauauuguggau | Influenza | WO 2007/053696 A2 | -76 |
| virsi2308 | ugcccguuuucaaaccggg | Yellow Fever Virus | 19169857 | 97 |
| PAT446 | ugcucaagcagauuauuug | RSV | EP1833490A2 | 88 |
| AD-14888 | ugcugaauagggaggaauc | JCV | US08058257 | 67.42 |
| AL-DP-8090 | uggaaauccuuuuucucaa | HPV | US20110230546A1 | 64.31 |
| A18552 | uggacacaugauggugauc | Ebola Zaire virus | US 7759320 | 9.8 |
| ND-8911 | uggaccggucgauguaugu | HPV | US20110230546A1 | 54.49 |
| ND-9102 | ugggccuacgauaaugaca | HPV | US20110230546A1 | 58.02 |
| ND-9089 | ugguacaaugggccuacga | HPV | US20110230546A1 | 50.87 |
| AD-14870 | uguagacagccauaugcag | JCV | US08058257 | 49.63 |
| AL-DP-7783 | uguauggaacaacauuaga | HPV | US20110230546A1 | 61.08 |
| virsi1249 | ugucaauaugcuaaaacgc | West Nile Virus [WNV] | 21423625 | 72 |
| AL-DP-7782 | ugugauuuguuaauuaggu | HPV | US20110230546A1 | 34.16 |
| virsi1040 | ugugcacuucgcuucaccu | Hepatitis B Virus [HBV] | 17596868 | 89 |
| virsi1720 | uguguguacugcaagcaac | Human Papillomavirus [HPV] | 16681752 | 90 |
| AD-14776 | uguguuuucagguucaugg | JCV | US08058257 | 28.72 |
| ND-9118 | uguuacagguagaagggcg | HPV | US20110230546A1 | 34.88 |
| AD-14918 | uuaacccaagaagcucuuc | JCV | US08058257 | -10.62 |
| 1142 | uuagcaggaagauggccag | HIV | 16959541 | 58 |
| ND-8927 | uuagguguauuaacuguca | HPV | US20110230546A1 | 58.6 |
| AD-14813 | uuaguaaaaccuggagugg | JCV | US08058257 | 22.03 |
| virsi2200 | uuagugguguuaguguaaa | West Nile Virus [WNV] | 19135091 | 95 |
| 1145 | uucccuacaauccccaaag | HIV | 16959541 | 33 |
| virsi1831 | uuccuauacuggcugcuua | Human Coxsackievirus [CV] | 18691577 | 64 |
| PAT466 | uucuaccauauauugaaca | RSV | EP1833490A2 | 7 |
| virsi1493 | uugacacaugcgccaaauu | West Nile Virus [WNV] | 15747251 | 51 |
| virsi1189 | uugccaggaugaccggguc | Hepatitis C Virus [HCV] | 17129382 | 57 |
| virsi1917 | uugccuucgaccuuuacgu | Herpes Simplex Virus [HSV] | 19129458 | 95 |
| ND-9094 | uugcgauugguguauugcu | HPV | US20110230546A1 | 8.67 |
| AD-14891 | uugcuuugauugcuucaga | JCV | US08058257 | 78.07 |
| virsi1241 | uuggaaaggggagcauuga | West Nile Virus [WNV] | 21423625 | 38 |
| A18646 | uuggaccaaugugaccuag | Ebola Zaire virus | US 7759320 | 45 |
| ND-9095 | uuggcagacacuaauagua | HPV | US20110230546A1 | 56.67 |
| AD-14904 | uugugauuuuccuccuaau | JCV | US08058257 | 77.35 |
| AD-14836 | uuuacuuuuaggguuguac | JCV | US08058257 | -8.84 |
| AL-DP-7808 | uuuauucuaaaauuaguga | HPV | US20110230546A1 | 3.82 |
| ND-8916 | uuugcuuuucgggauuuau | HPV | US20110230546A1 | 50.22 |
| AD-14823 | uuuguuagaauuuuugcug | JCV | US08058257 | 3.5 |