HIVsirDB: A database of HIV inhibiting siRNAs

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HIVsir ID	HIV Strain	NCBI Accession	Target Gene	Position of siRNA target	Sense Sequence of siRNA	Efficacy (%)	GC Content (%)	Cell line	PubMed
1059	HIV-1 (NL4-3)	AF324493	Env	8752	AAUAAGACAGGGCUUGGAAAG	76.00	35	293 T	15564478
1655	HIV-1 (NL4-3)	AF324493	VIF	5108	GAACAAGCCCCAGAAGACCA	76.00	44	293 FT cells	20949027
1398	HIV-1 (NL4-3)	AF324493	LTR	513	ACUGCUUAAGCCUCAAUAAUA	76.00	27	293 T	19110017
1178	HIV-1 (LAI)	K02013	Pol	4542	AAGGUGAAGGGGCAGUAGU	76.00	42	293 T	16959541
1003	HIV-1 (IIIB)	EU541617	Gag	1608	GAUUGUACUGAGAGACAGGCU	76.00	38	Hela	12042777
1214	HIV-1 (LAI)	K02013	LTR	N/A	AGACCAGAUCUGAGCCUGGUU	76.00	42	Hela	17360756
1315	93IN101	AB023804	LTR	689	ACGCAGGACUCGGCUUGCUGA	76.50	50	Hela	17996047
1263	HIV-1 (NL4-3)	AF324493	Pol	4794	GGGGGGAUUGGGGGGUACAGU	76.80	54	Hela	17996047
1378	HIV-1 (NL4-3)	AF324493	LTR	265	GGCAAGAGGCGAGGGGCGGC	77.00	64	Hela	18208841
1411	HIV-1 (LAI)	K02013	Gag	1624	AGGCUAAUUUUUUAGGGAA	77.00	25	293 T	19384894
1361	93JP-NH1	AB052995	Pol	4378	UGCAUGGACAAGUAGACUGUA	77.90	35	Hela	17996047
1125	HIV-1 (LAI)	K02013	Gag	333	GAGAUGGGUGCGAGAGCGU	78.00	50	293 T	16959541
1537	HIV-1 (LAI)	K02013	Tat/Rev	5551	AUGGCAGGAAGAAGCGGAG	78.00	46	Hela	20188764
1389	HIV-1 (NL4-3)	AF324493	Rev	N/A	GCACUUAUCUGGGACGAU	78.00	39	Hela	18510865
1143	HIV-1 (LAI)	K02013	Pol	4122	UAGCAGGAAGAUGGCCAGU	78.00	42	293 T	16959541
1224	HIV-1 (LAI)	K02013	Pol	4545	GUGAAGGGGCAGUAGUAAU	78.00	38	293 T	17628029
1108	HIV-1 (NL4-3)	AF324493	Int	4285	GGAGAGCAAUGGCUAGUGA	78.00	42	293 T	16840344
1065	HIV-1 (IIIB)	EU541617	Nef	N/A	GCGUCGACGUGCCUGGCUAGAAGCACA	78.40	53	MT-4 T/Jurkat T	15601474
1491	HIV-1 (NL4-3)	AF324493	Vpu	144	AGCAGAAGACAGUGGCAAUG	78.60	40	HEK 293a	19497094
1502	HIV-1 (NL4-3)	AF324493	Env	1425	CAAUUGGAGAAGUGAAUUAU	78.60	24	HEK 293a	19497094
1249	HIV-1 (NL4-3)	AF324493	Pol	2485	GACCUACACCUGUCAACAUAA	79.70	35	Hela	17996047
1652	HIV-1 (NL4-3)	AF324493	Gag/pol	4142	AGUACUACAGUUAAGGCCGC	80.00	40	293 FT cells	20949027
1575	HIV-1 (IIIB)	EU541617	vif	K*5195	GUUCAGAAGUACACAUCCC	80.00	38	Hela	15831707
1578	HIV-1(BAL)	K02013	vif	K*5195	GUUCAGAAGUACACAUCCC	80.00	38	Hela	15831707
1584	RL42	U71182	vif	K*5195	GUUCAGAAGUACACAUCCC	80.00	38	Hela	15831707