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Next   PreviousPage - 1 of 2 HIVsir ID HIV Strain NCBI Accession Target Gene Position of siRNA target Sense Sequence of siRNA Efficacy (%) GC Content (%) Cell line PubMed 1068 HIV-1 (IIIB) EU541617 Nef N/A GCUCGACGGCUACUUCCCUGAUUGGC 65.50 52 MT-4 T/Jurkat T 15601474 1565 HIV-1 (NL4-3) AF324493 rev 8469 GGGCCUGUGCCUCUUCAGCUACCA 90.00 52 293 T 20144240 1066 HIV-1 (IIIB) EU541617 Nef N/A GCGUCGACGCACAAGAGGAGGAGA 70.90 52 MT-4 T/Jurkat T 15601474 1377 HIV-1 (NL4-3) AF324493 LTR 234 GACGCAGGACUCGGCUUGCU 46.00 52 Hela 18208841 1591 HIV-1 (LAI) K02013 LTR N/A UGGCGCCCGAACAGGGACUU 0.00 52 SupT1 14963165 1675 HIV-1 NA Nef NA CUGCCUGGCUAGAAGCACA 41.00 52 SupT1 18668146 1658 HIV-1NL4-3 AF324493 TAT/REV 5982 GCGGAGACAGCGACGAAGAG 93.00 52 Hek 293 17726454 1396 HIV-1 (NL4-3) AF324493 LTR 28 GCCUGGGACGUCUCUGGCUA 23.20 52 293 T 18996348 1065 HIV-1 (IIIB) EU541617 Nef N/A GCGUCGACGUGCCUGGCUAGAAGCACA 78.40 53 MT-4 T/Jurkat T 15601474 1590 HIV-1 (LAI) K02013 LTR N/A GUGGCGCCCGAACAGGGACUU 0.00 54 SupT1 14963165 1607 HIV-1 (NL4-3) AF324493 tat K*5983 GCGGAGACAGCGACGAAGAGC 92.00 54 293 T 18596982 1365 93JP-NH1 AB052995 Pol 4794 GGGGGGAUUGGGGGGUACAGU 83.80 54 Hela 17996047 1397 HIV-1 (NL4-3) AF324493 Rev 5982 GCGGAGACAGCGACGAAGAGC 82.00 54 293 T 19110017 1215 HIV-1 (NL4-3) AF324493 Tat/Rev 5982 GCGGAGACAGCGACGAAGAGC 95.00 54 CCL-1573 17426139 1335 93IN101 AB023804 Pol 4794 GGGGGGAUUGGGGGGUACAGU 85.30 54 Hela 17996047 1568 HIV-1 (NL4-3) AF324493 Tat/Rev 5982 GCGGAGACAGCGACGAAGAGC 93.00 54 HEK 293T 18461053 1002 HIV-1 (NL4-3) AF324493 Tat/Rev 5982 GCGGAGACAGCGACGAAGAGC 67.00 54 293T/EcR 11981565 1050 HIV-1 (NL4-3) AF324493 Tat/Rev N/A GCGGAGACAGCGACGAAGAGC 100.00 54 293 T 15336659 1092 HIV-1 (R3b) K02013 Tat/Rev N/A GCGGAGACAGCGACGAAGAGC 82.00 54 CEMx174 15851006 1263 HIV-1 (NL4-3) AF324493 Pol 4794 GGGGGGAUUGGGGGGUACAGU 76.80 54 Hela 17996047 1610 HIV-1 (NL4-3) AF324493 LTR 350 GGGACUUUCCGCUGGGGAC 200.00 54 MAGIC 18519571 1592 HIV-1 (LAI) K02013 LTR N/A GGGGGGACUGGAAGGGCUA 0.00 54 SupT1 14963165 1391 HIV-1 (NL4-3) AF324493 Rev N/A GAGGGGACCAGGGAGAGCA 63.00 54 Hela 18510865 1528 HIV-1 (CL-2) K02013 LTR N/A GGGACUUUCCGCUGGGGAC 0.00 54 MAGIC-5 19771207 1527 HIV-1 (CL-1) K02013 LTR N/A GGGACUUUCCGCUGGGGAC 0.00 54 MAGIC-5 19771207

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