Quorum Sensing Peptide and mutants

QSPepDesign is a prediction tool which allows users to design Quorum sensing peptides by developing all possible mutants of a given peptide to predict Quorum sensing(QS) ability of designed peptides. It also provide information related to important user defined physico-chemical properties. Along with this after designing and generating mutants user can further select peptide mutant to generate other possible mutants and predict their activity. User can also download results by clicking icon. For more information click Help.

::QSPepDesign::
         Enter a Peptide sequence (Length range 5-50 aa) below:    
             

                   
  
        Peptide prediction models used:   
          MODEL_1: Composition AAC+DPC based
          MODEL_2: Binary pattern N and C terminal (BNC) based
          MODEL_3: Physio-chemical properties (Physico) based
          MODEL_4: AAC+DPC+BNC+Physico based
   Optimal SVM threshold:
      (-0.6)
      (-0.1)
      (0.0)
      (-0.2)


        Please select Machine Learning Techniques:   

           SVM based            KNN based (Weka)            RF based (Weka)           

         Choose SVM threshold:            

  
                        






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