Mapping of Peptides on protein

QSPepMap allows users to map peptide sequences of desired window length on user provided protein sequence to predict peptide regions with Quorum sensing ability in a protein. It gives output with the information such as protein id, protein length, peptide length, svm threshold, total number of peptides, number and percentage of QS peptides, number and percentage of non-QS peptides. It also provide information related to important user defined physico-chemical properties. Along with this after prediction user can select individual peptide to generate all possible mutants. User can also download results by clicking icon. For more information click Help.

::QSPepMap::          Enter a Protein sequence below:       
                            

         Choose peptide fragment length:          

  
        Peptide prediction models used:   
          MODEL_1: Composition AAC+DPC based
          MODEL_2: Binary pattern N and C terminal (BNC) based
          MODEL_3: Physio-chemical properties (Physico) based
          MODEL_4: AAC+DPC+BNC+Physico based
   Optimal SVM threshold:
      (-0.6)
      (-0.1)
      (0.0)
      (-0.2)


        Please select Machine Learning Techniques:   

           SVM based            KNN based (Weka)            RF based (Weka)           


         Choose SVM threshold:                   

                         



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