VIRsiRNAdb

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Total number of Results for Japanese Encephalitis Virus [JE] are 6
Results from 0 - 25

siRNA sequence "gacuucggcuuuggcauca" alignment with "Japanese Encephalitis Virus [JE]" virus reference Genome sequences
siRNA sequence matching with "gacuucggcuuuggcauca" Japanese Encephalitis Virus [JE]" Virus reference Genome sequences
Browse all the records for "Japanese Encephalitis Virus [JE]" virus
Browse "virsi1485 " record
Length: 19
GC Content:53 %
Starting position: 451
Strain of Virus: SA14-14-2
GenBank Acc: AF315119
Transfection Reagent: Lipofectamine
Incubation Time (Hours):48

Offtargets for "gacuucggcuuuggcauca" siRNA in Human Genome sequences
See AF315119 at Genbank
Pubmed:16791421
Article:Inhibition of Japanese encephalitis virus NS1 protein expression in cell by small interfering RNAs.
Authors:Liu X, Cao S, Zhou R, Xu G, Xiao S, Yang Y, Sun M, Li Y, Chen H.
Journal:Virus Genes. 2006 Aug;33(1):69-75.
Entrez:16791421

siRNA sequence "ggauguggacuuuucggga" alignment with "Japanese Encephalitis Virus [JE]" virus reference Genome sequences
siRNA sequence matching with "ggauguggacuuuucggga" Japanese Encephalitis Virus [JE]" Virus reference Genome sequences
Browse all the records for "Japanese Encephalitis Virus [JE]" virus
Browse "virsi1498 " record
Length: 19
GC Content:53 %
Starting position: 1287
GenBank Acc: NC_006551
Transfection Reagent: Lipofectamine

Offtargets for "ggauguggacuuuucggga" siRNA in Human Genome sequences
See NC_006551 at Genbank
Pubmed:16464133
Article:A single siRNA suppresses fatal encephalitis induced by two different flaviviruses.
Authors:Kumar P, Lee SK, Shankar P, Manjunath N.
Journal:PLoS Med. 2006 Apr;3(4):e96. Epub 2006 Feb 14.
Entrez:16464133

siRNA sequence "gggagcauugacacaugugca" alignment with "Japanese Encephalitis Virus [JE]" virus reference Genome sequences
siRNA sequence matching with "gggagcauugacacaugugca" Japanese Encephalitis Virus [JE]" Virus reference Genome sequences
Browse all the records for "Japanese Encephalitis Virus [JE]" virus
Browse "virsi1499 " record
Length: 21
GC Content:52 %
Starting position: 1307
GenBank Acc: 16464133
Transfection Reagent: Lipofectamine

Offtargets for "gggagcauugacacaugugca" siRNA in Human Genome sequences
See 16464133 at Genbank
Pubmed:16464133
Article:A single siRNA suppresses fatal encephalitis induced by two different flaviviruses.
Authors:Kumar P, Lee SK, Shankar P, Manjunath N.
Journal:PLoS Med. 2006 Apr;3(4):e96. Epub 2006 Feb 14.
Entrez:16464133

siRNA sequence "cagcaugcaaaucgaagac" alignment with "Japanese Encephalitis Virus [JE]" virus reference Genome sequences
siRNA sequence matching with "cagcaugcaaaucgaagac" Japanese Encephalitis Virus [JE]" Virus reference Genome sequences
Browse all the records for "Japanese Encephalitis Virus [JE]" virus
Browse "virsi1484 " record
Length: 19
GC Content:47 %
Starting position: 451
Strain of Virus: SA14-14-2
GenBank Acc: AF315119
Transfection Reagent: Lipofectamine
Incubation Time (Hours):48

Offtargets for "cagcaugcaaaucgaagac" siRNA in Human Genome sequences
See AF315119 at Genbank
Pubmed:16791421
Article:Inhibition of Japanese encephalitis virus NS1 protein expression in cell by small interfering RNAs.
Authors:Liu X, Cao S, Zhou R, Xu G, Xiao S, Yang Y, Sun M, Li Y, Chen H.
Journal:Virus Genes. 2006 Aug;33(1):69-75.
Entrez:16791421

siRNA sequence "acgccuauccaugacgcaa" alignment with "Japanese Encephalitis Virus [JE]" virus reference Genome sequences
siRNA sequence matching with "acgccuauccaugacgcaa" Japanese Encephalitis Virus [JE]" Virus reference Genome sequences
Browse all the records for "Japanese Encephalitis Virus [JE]" virus
Browse "virsi1483 " record
Length: 19
GC Content:53 %
Starting position: 304
Strain of Virus: SA14-14-2
GenBank Acc: AF315119
Transfection Reagent: Lipofectamine
Incubation Time (Hours):48

Offtargets for "acgccuauccaugacgcaa" siRNA in Human Genome sequences
See AF315119 at Genbank
Pubmed:16791421
Article:Inhibition of Japanese encephalitis virus NS1 protein expression in cell by small interfering RNAs.
Authors:Liu X, Cao S, Zhou R, Xu G, Xiao S, Yang Y, Sun M, Li Y, Chen H.
Journal:Virus Genes. 2006 Aug;33(1):69-75.
Entrez:16791421

siRNA sequence "agcgcacaaggaaggcgug" alignment with "Japanese Encephalitis Virus [JE]" virus reference Genome sequences
siRNA sequence matching with "agcgcacaaggaaggcgug" Japanese Encephalitis Virus [JE]" Virus reference Genome sequences
Browse all the records for "Japanese Encephalitis Virus [JE]" virus
Browse "virsi1407 " record
Length: 19
GC Content:63 %
Starting position: 142
Strain of Virus: SA14-14-2
GenBank Acc: AF315119
Transfection Reagent: Lipofectamine
Incubation Time (Hours):48

Offtargets for "agcgcacaaggaaggcgug" siRNA in Human Genome sequences
See AF315119 at Genbank
Pubmed:16791421
Article:Inhibition of Japanese encephalitis virus NS1 protein expression in cell by small interfering RNAs.
Authors:Liu X, Cao S, Zhou R, Xu G, Xiao S, Yang Y, Sun M, Li Y, Chen H.
Journal:Virus Genes. 2006 Aug;33(1):69-75.
Entrez:16791421


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1485	gacuucggcuuuggcauca	Japanese Encephalitis Virus [JE]	NS1	Monkey Kidney Cells	Protein	90	16791421	Blast SL	refseqs
virsi1498	ggauguggacuuuucggga	Japanese Encephalitis Virus [JE]	E	Monkey Kidney Cells	Viral Load	90	16464133	Blast SL	refseqs
virsi1499	gggagcauugacacaugugca	Japanese Encephalitis Virus [JE]	E	Monkey Kidney Cells	Viral Load	90	16464133	Blast SL	refseqs
virsi1484	cagcaugcaaaucgaagac	Japanese Encephalitis Virus [JE]	NS1	Monkey Kidney Cells	Protein	85	16791421	Blast SL	refseqs
virsi1483	acgccuauccaugacgcaa	Japanese Encephalitis Virus [JE]	NS1	Monkey Kidney Cells	Protein	84	16791421	Blast SL	refseqs
virsi1407	agcgcacaaggaaggcgug	Japanese Encephalitis Virus [JE]	NS1	Monkey Kidney Cells	Protein	60	16791421	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm