VIRsiRNAdb

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Total number of Results for 16979254 are 9
Results from 0 - 25

siRNA sequence "aacgagguuacuaccacacac" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "aacgagguuacuaccacacac" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2137 " record
Length: 21
GC Content:48 %
Starting position: 8373
Strain of Virus: Isolate Con1
GenBank Acc: AJ238799
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "aacgagguuacuaccacacac" siRNA in Human Genome sequences
See AJ238799 at Genbank
Pubmed:16979254
Article:Inhibition of hepatitis C virus gene expression by small interfering RNAs using a tri-cistronic full-length viral replicon and a transient mouse model.
Authors:Kim M, Shin D, Kim SI, Park M.
Journal:Virus Res. 2006 Dec;122(1-2):1-10. Epub 2006 Sep 15.
Entrez:16979254

siRNA sequence "aaggcgacaaccuauccccaa" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "aaggcgacaaccuauccccaa" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2134 " record
Length: 21
GC Content:52 %
Starting position: 523
Strain of Virus: Isolate Con1
GenBank Acc: AJ238799
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "aaggcgacaaccuauccccaa" siRNA in Human Genome sequences
See AJ238799 at Genbank
Pubmed:16979254
Article:Inhibition of hepatitis C virus gene expression by small interfering RNAs using a tri-cistronic full-length viral replicon and a transient mouse model.
Authors:Kim M, Shin D, Kim SI, Park M.
Journal:Virus Res. 2006 Dec;122(1-2):1-10. Epub 2006 Sep 15.
Entrez:16979254

siRNA sequence "aaggcacaugguaucgacccu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "aaggcacaugguaucgacccu" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2136 " record
Length: 21
GC Content:52 %
Starting position: 7284
Strain of Virus: Isolate Con1
GenBank Acc: AJ238799
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "aaggcacaugguaucgacccu" siRNA in Human Genome sequences
See AJ238799 at Genbank
Pubmed:16979254
Article:Inhibition of hepatitis C virus gene expression by small interfering RNAs using a tri-cistronic full-length viral replicon and a transient mouse model.
Authors:Kim M, Shin D, Kim SI, Park M.
Journal:Virus Res. 2006 Dec;122(1-2):1-10. Epub 2006 Sep 15.
Entrez:16979254

siRNA sequence "aagccagcucgccuuaucgua" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "aagccagcucgccuuaucgua" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2141 " record
Length: 21
GC Content:52 %
Starting position: 11196
Strain of Virus: Isolate Con1
GenBank Acc: AJ238799
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "aagccagcucgccuuaucgua" siRNA in Human Genome sequences
See AJ238799 at Genbank
Pubmed:16979254
Article:Inhibition of hepatitis C virus gene expression by small interfering RNAs using a tri-cistronic full-length viral replicon and a transient mouse model.
Authors:Kim M, Shin D, Kim SI, Park M.
Journal:Virus Res. 2006 Dec;122(1-2):1-10. Epub 2006 Sep 15.
Entrez:16979254

siRNA sequence "aacggggagcuaaacacucca" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "aacggggagcuaaacacucca" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2142 " record
Length: 21
GC Content:52 %
Starting position: 12509
Strain of Virus: Isolate Con1
GenBank Acc: AJ238799
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "aacggggagcuaaacacucca" siRNA in Human Genome sequences
See AJ238799 at Genbank
Pubmed:16979254
Article:Inhibition of hepatitis C virus gene expression by small interfering RNAs using a tri-cistronic full-length viral replicon and a transient mouse model.
Authors:Kim M, Shin D, Kim SI, Park M.
Journal:Virus Res. 2006 Dec;122(1-2):1-10. Epub 2006 Sep 15.
Entrez:16979254

siRNA sequence "aagccuucugggcgaagcaua" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "aagccuucugggcgaagcaua" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2139 " record
Length: 21
GC Content:52 %
Starting position: 8749
Strain of Virus: Isolate Con1
GenBank Acc: AJ238799
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "aagccuucugggcgaagcaua" siRNA in Human Genome sequences
See AJ238799 at Genbank
Pubmed:16979254
Article:Inhibition of hepatitis C virus gene expression by small interfering RNAs using a tri-cistronic full-length viral replicon and a transient mouse model.
Authors:Kim M, Shin D, Kim SI, Park M.
Journal:Virus Res. 2006 Dec;122(1-2):1-10. Epub 2006 Sep 15.
Entrez:16979254

siRNA sequence "aacaggcagcguggucauugu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "aacaggcagcguggucauugu" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2138 " record
Length: 21
GC Content:52 %
Starting position: 8504
Strain of Virus: Isolate Con1
GenBank Acc: AJ238799
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "aacaggcagcguggucauugu" siRNA in Human Genome sequences
See AJ238799 at Genbank
Pubmed:16979254
Article:Inhibition of hepatitis C virus gene expression by small interfering RNAs using a tri-cistronic full-length viral replicon and a transient mouse model.
Authors:Kim M, Shin D, Kim SI, Park M.
Journal:Virus Res. 2006 Dec;122(1-2):1-10. Epub 2006 Sep 15.
Entrez:16979254

siRNA sequence "aaugacucccucaacacuggg" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "aaugacucccucaacacuggg" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2135 " record
Length: 21
GC Content:52 %
Starting position: 1631
Strain of Virus: Isolate Con1
GenBank Acc: AJ238799
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "aaugacucccucaacacuggg" siRNA in Human Genome sequences
See AJ238799 at Genbank
Pubmed:16979254
Article:Inhibition of hepatitis C virus gene expression by small interfering RNAs using a tri-cistronic full-length viral replicon and a transient mouse model.
Authors:Kim M, Shin D, Kim SI, Park M.
Journal:Virus Res. 2006 Dec;122(1-2):1-10. Epub 2006 Sep 15.
Entrez:16979254

siRNA sequence "aaaggacguccggaaccuauc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "aaaggacguccggaaccuauc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2140 " record
Length: 21
GC Content:52 %
Starting position: 11048
Strain of Virus: Isolate Con1
GenBank Acc: AJ238799
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "aaaggacguccggaaccuauc" siRNA in Human Genome sequences
See AJ238799 at Genbank
Pubmed:16979254
Article:Inhibition of hepatitis C virus gene expression by small interfering RNAs using a tri-cistronic full-length viral replicon and a transient mouse model.
Authors:Kim M, Shin D, Kim SI, Park M.
Journal:Virus Res. 2006 Dec;122(1-2):1-10. Epub 2006 Sep 15.
Entrez:16979254


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi2137	aacgagguuacuaccacacac	Hepatitis C Virus [HCV]	NS3	Huh-7	RNA	63	16979254	Blast SL	refseqs
virsi2134	aaggcgacaaccuauccccaa	Hepatitis C Virus [HCV]	NAa	Huh-7	RNA	59	16979254	Blast SL	refseqs
virsi2136	aaggcacaugguaucgacccu	Hepatitis C Virus [HCV]	E2	Huh-7	RNA	55	16979254	Blast SL	refseqs
virsi2141	aagccagcucgccuuaucgua	Hepatitis C Virus [HCV]	NS5B	Huh-7	RNA	55	16979254	Blast SL	refseqs
virsi2142	aacggggagcuaaacacucca	Hepatitis C Virus [HCV]	NS5B	Huh-7	RNA	52	16979254	Blast SL	refseqs
virsi2139	aagccuucugggcgaagcaua	Hepatitis C Virus [HCV]	NS4A	Huh-7	RNA	49	16979254	Blast SL	refseqs
virsi2138	aacaggcagcguggucauugu	Hepatitis C Virus [HCV]	NS3	Huh-7	RNA	35	16979254	Blast SL	refseqs
virsi2135	aaugacucccucaacacuggg	Hepatitis C Virus [HCV]	C	Huh-7	RNA	30	16979254	Blast SL	refseqs
virsi2140	aaaggacguccggaaccuauc	Hepatitis C Virus [HCV]	NS4B	Huh-7	RNA	30	16979254	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm