VIRsiRNAdb
Database of Viral siRNA / shRNA
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Family of Virus
Virus Name
Gene Name
Pubmed Id
VsiRNAid
Total number of Results for
19704168
are
4
Results from
0 - 25
VIRsiRNAid
siRNA Sequence
Virus_Name
Target Region
Cell Line
Test Object
Efficacy
PMID
Offtarget
Align With
ALIGN0 Result
virsi1846
aagcacuuuagugaccuggaa
Epstein-Barr Virus [EBV]
PR
293/EBV-GFP
mRNA
64
19704168
Blast
SL
refseqs
     
siRNA sequence "
aagcacuuuagugaccuggaa
" alignment with "
Epstein-Barr Virus [EBV]
" virus reference Genome sequences
siRNA sequence matching with "
aagcacuuuagugaccuggaa
"
Epstein-Barr Virus [EBV]
" Virus reference Genome sequences
Browse all the records for "
Epstein-Barr Virus [EBV]
" virus
Browse "
virsi1846
" record
Length:
21
GC Content:
43 %
Starting position:
136954
Strain of Virus:
B95-8
GenBank Acc:
NC_009334
Transfection Reagent:
Jetsi-ENDO
Incubation Time (Hours):
72
Offtargets for "
aagcacuuuagugaccuggaa
" siRNA in Human Genome sequences
See
NC_009334
at Genbank
Pubmed:
19704168
Article:
Inhibition of Epstein-Barr virus replication by small interfering RNA targeting the Epstein-Barr virus protease gene.
Authors:
Larrat S, Morand P, Bas A, Vigne S, Crance JM, Boyer V, Nicod S, Grossi L, Buisson M, Burmeister WP, Seigneurin JM, Germi R.
Journal:
Antivir Ther. 2009;14(5):655-62.
Entrez:
19704168
virsi1848
aaggccaucgaugcuggauuu
Epstein-Barr Virus [EBV]
PR
293/EBV-GFP
mRNA
54
19704168
Blast
SL
refseqs
     
siRNA sequence "
aaggccaucgaugcuggauuu
" alignment with "
Epstein-Barr Virus [EBV]
" virus reference Genome sequences
siRNA sequence matching with "
aaggccaucgaugcuggauuu
"
Epstein-Barr Virus [EBV]
" Virus reference Genome sequences
Browse all the records for "
Epstein-Barr Virus [EBV]
" virus
Browse "
virsi1848
" record
Length:
21
GC Content:
48 %
Starting position:
137074
Strain of Virus:
B95-8
GenBank Acc:
NC_009334
Transfection Reagent:
Jetsi-ENDO
Incubation Time (Hours):
72
Offtargets for "
aaggccaucgaugcuggauuu
" siRNA in Human Genome sequences
See
NC_009334
at Genbank
Pubmed:
19704168
Article:
Inhibition of Epstein-Barr virus replication by small interfering RNA targeting the Epstein-Barr virus protease gene.
Authors:
Larrat S, Morand P, Bas A, Vigne S, Crance JM, Boyer V, Nicod S, Grossi L, Buisson M, Burmeister WP, Seigneurin JM, Germi R.
Journal:
Antivir Ther. 2009;14(5):655-62.
Entrez:
19704168
virsi1845
aggcaagcuguccuucuuuga
Epstein-Barr Virus [EBV]
PR
293/EBV-GFP
mRNA
48
19704168
Blast
SL
refseqs
     
siRNA sequence "
aggcaagcuguccuucuuuga
" alignment with "
Epstein-Barr Virus [EBV]
" virus reference Genome sequences
siRNA sequence matching with "
aggcaagcuguccuucuuuga
"
Epstein-Barr Virus [EBV]
" Virus reference Genome sequences
Browse all the records for "
Epstein-Barr Virus [EBV]
" virus
Browse "
virsi1845
" record
Length:
21
GC Content:
48 %
Starting position:
136857
Strain of Virus:
B95-8
GenBank Acc:
NC_009334
Transfection Reagent:
Jetsi-ENDO
Incubation Time (Hours):
72
Offtargets for "
aggcaagcuguccuucuuuga
" siRNA in Human Genome sequences
See
NC_009334
at Genbank
Pubmed:
19704168
Article:
Inhibition of Epstein-Barr virus replication by small interfering RNA targeting the Epstein-Barr virus protease gene.
Authors:
Larrat S, Morand P, Bas A, Vigne S, Crance JM, Boyer V, Nicod S, Grossi L, Buisson M, Burmeister WP, Seigneurin JM, Germi R.
Journal:
Antivir Ther. 2009;14(5):655-62.
Entrez:
19704168
virsi1847
aaggcacuucagagcccacca
Epstein-Barr Virus [EBV]
PR
293/EBV-GFP
mRNA
7
19704168
Blast
SL
refseqs
     
siRNA sequence "
aaggcacuucagagcccacca
" alignment with "
Epstein-Barr Virus [EBV]
" virus reference Genome sequences
siRNA sequence matching with "
aaggcacuucagagcccacca
"
Epstein-Barr Virus [EBV]
" Virus reference Genome sequences
Browse all the records for "
Epstein-Barr Virus [EBV]
" virus
Browse "
virsi1847
" record
Length:
21
GC Content:
57 %
Starting position:
137200
Strain of Virus:
B95-8
GenBank Acc:
NC_009334
Transfection Reagent:
Jetsi-ENDO
Incubation Time (Hours):
72
Offtargets for "
aaggcacuucagagcccacca
" siRNA in Human Genome sequences
See
NC_009334
at Genbank
Pubmed:
19704168
Article:
Inhibition of Epstein-Barr virus replication by small interfering RNA targeting the Epstein-Barr virus protease gene.
Authors:
Larrat S, Morand P, Bas A, Vigne S, Crance JM, Boyer V, Nicod S, Grossi L, Buisson M, Burmeister WP, Seigneurin JM, Germi R.
Journal:
Antivir Ther. 2009;14(5):655-62.
Entrez:
19704168
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL
: siRNA seedlocator algorithm