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- Family of Virus
- Virus Name
- Gene Name
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- VsiRNAid
Total number of Results for NSP are 8
Results from 0 - 25
siRNA sequence "ucgcagaaagaaaaauccaac" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "ucgcagaaagaaaaauccaac" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2313 " record
Length: 21
GC Content:38 %
Strain of Virus: SFV8
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Length: 21
GC Content:38 %
Strain of Virus: SFV8
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Offtargets for "ucgcagaaagaaaaauccaac" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029
siRNA sequence "cgguuaaaggcaguaggguug" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "cgguuaaaggcaguaggguug" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2314 " record
Length: 21
GC Content:52 %
Strain of Virus: SFV9
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Length: 21
GC Content:52 %
Strain of Virus: SFV9
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Offtargets for "cgguuaaaggcaguaggguug" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029
siRNA sequence "gagggauuccuagugugcaag" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "gagggauuccuagugugcaag" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2309 " record
Length: 21
GC Content:52 %
Strain of Virus: SFV4
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Length: 21
GC Content:52 %
Strain of Virus: SFV4
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Offtargets for "gagggauuccuagugugcaag" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029
siRNA sequence "guuuauuaacacuguuuugaa" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "guuuauuaacacuguuuugaa" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2316 " record
Length: 21
GC Content:24 %
Strain of Virus: SFV11
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Length: 21
GC Content:24 %
Strain of Virus: SFV11
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Offtargets for "guuuauuaacacuguuuugaa" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029
siRNA sequence "gacucgucuuccacugccagc" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "gacucgucuuccacugccagc" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2315 " record
Length: 21
GC Content:62 %
Strain of Virus: SFV10
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Length: 21
GC Content:62 %
Strain of Virus: SFV10
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Offtargets for "gacucgucuuccacugccagc" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029
siRNA sequence "ucgcuugccauuccgguacuc" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "ucgcuugccauuccgguacuc" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2312 " record
Length: 21
GC Content:57 %
Strain of Virus: SFV7
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Length: 21
GC Content:57 %
Strain of Virus: SFV7
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Offtargets for "ucgcuugccauuccgguacuc" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029
siRNA sequence "uccgggaucaggcaagucugc" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "uccgggaucaggcaagucugc" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2311 " record
Length: 21
GC Content:62 %
Strain of Virus: SFV6
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Length: 21
GC Content:62 %
Strain of Virus: SFV6
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Offtargets for "uccgggaucaggcaagucugc" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029
siRNA sequence "ugggcgagggaauacaaggca" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "ugggcgagggaauacaaggca" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2310 " record
Length: 21
GC Content:57 %
Strain of Virus: SFV5
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Length: 21
GC Content:57 %
Strain of Virus: SFV5
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24
Offtargets for "ugggcgagggaauacaaggca" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029
| VIRsiRNAid | siRNA Sequence |  Virus_Name | Target Region | Cell Line | Test Object | Efficacy | PMID | Offtarget | Align With | ALIGN0 Result |
|---|---|---|---|---|---|---|---|---|---|---|
| virsi2313 | ucgcagaaagaaaaauccaac | Semliki Forest Virus |  SL | refseqs |  | |||||
| virsi2314 | cgguuaaaggcaguaggguug | Semliki Forest Virus | SL | refseqs |  | |||||
| virsi2309 | gagggauuccuagugugcaag | Semliki Forest Virus | SL | refseqs |  | |||||
| virsi2316 | guuuauuaacacuguuuugaa | Semliki Forest Virus | SL | refseqs |  | |||||
| virsi2315 | gacucgucuuccacugccagc | Semliki Forest Virus | SL | refseqs |  | |||||
| virsi2312 | ucgcuugccauuccgguacuc | Semliki Forest Virus | SL | refseqs |  | |||||
| virsi2311 | uccgggaucaggcaagucugc | Semliki Forest Virus | SL | refseqs |  | |||||
| virsi2310 | ugggcgagggaauacaaggca | Semliki Forest Virus | SL | refseqs |  |
: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific SL: siRNA seedlocator algorithm