VIRsiRNAdb

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• VsiRNAid

Total number of Results for mu-NS are 7
Results from 0 - 25

siRNA sequence "gcagcugccaaaugucaaa" alignment with "Reovirus" virus reference Genome sequences
siRNA sequence matching with "gcagcugccaaaugucaaa" Reovirus" Virus reference Genome sequences
Browse all the records for "Reovirus" virus
Browse "virsi1436 " record
Length: 19
GC Content:47 %
Strain of Virus: T3D
GenBank Acc: M27261
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "gcagcugccaaaugucaaa" siRNA in Human Genome sequences
See M27261 at Genbank
Pubmed:16940517
Article:Gene-specific inhibition of reovirus replication by RNA interference.
Authors:Kobayashi T, Chappell JD, Danthi P, Dermody TS.
Journal:J Virol. 2006 Sep;80(18):9053-63.
Entrez:16940517

siRNA sequence "gucagcucaaucauguagc" alignment with "Reovirus" virus reference Genome sequences
siRNA sequence matching with "gucagcucaaucauguagc" Reovirus" Virus reference Genome sequences
Browse all the records for "Reovirus" virus
Browse "virsi1434 " record
Length: 19
GC Content:47 %
Strain of Virus: T3D
GenBank Acc: M27261
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "gucagcucaaucauguagc" siRNA in Human Genome sequences
See M27261 at Genbank
Pubmed:16940517
Article:Gene-specific inhibition of reovirus replication by RNA interference.
Authors:Kobayashi T, Chappell JD, Danthi P, Dermody TS.
Journal:J Virol. 2006 Sep;80(18):9053-63.
Entrez:16940517

siRNA sequence "gaugaauugcuugacgcug" alignment with "Reovirus" virus reference Genome sequences
siRNA sequence matching with "gaugaauugcuugacgcug" Reovirus" Virus reference Genome sequences
Browse all the records for "Reovirus" virus
Browse "virsi1435 " record
Length: 19
GC Content:47 %
Strain of Virus: T3D
GenBank Acc: M27261
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "gaugaauugcuugacgcug" siRNA in Human Genome sequences
See M27261 at Genbank
Pubmed:16940517
Article:Gene-specific inhibition of reovirus replication by RNA interference.
Authors:Kobayashi T, Chappell JD, Danthi P, Dermody TS.
Journal:J Virol. 2006 Sep;80(18):9053-63.
Entrez:16940517

siRNA sequence "auguggaauuggacgcguu" alignment with "Reovirus" virus reference Genome sequences
siRNA sequence matching with "auguggaauuggacgcguu" Reovirus" Virus reference Genome sequences
Browse all the records for "Reovirus" virus
Browse "virsi1432 " record
Length: 19
GC Content:47 %
Strain of Virus: T3D
GenBank Acc: M27261
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "auguggaauuggacgcguu" siRNA in Human Genome sequences
See M27261 at Genbank
Pubmed:16940517
Article:Gene-specific inhibition of reovirus replication by RNA interference.
Authors:Kobayashi T, Chappell JD, Danthi P, Dermody TS.
Journal:J Virol. 2006 Sep;80(18):9053-63.
Entrez:16940517

siRNA sequence "agcagucgggauugauacu" alignment with "Reovirus" virus reference Genome sequences
siRNA sequence matching with "agcagucgggauugauacu" Reovirus" Virus reference Genome sequences
Browse all the records for "Reovirus" virus
Browse "virsi2066 " record
Length: 19
GC Content:47 %
Strain of Virus: T3D
GenBank Acc: M27261
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "agcagucgggauugauacu" siRNA in Human Genome sequences
See M27261 at Genbank
Pubmed:16940517
Article:Gene-specific inhibition of reovirus replication by RNA interference.
Authors:Kobayashi T, Chappell JD, Danthi P, Dermody TS.
Journal:J Virol. 2006 Sep;80(18):9053-63.
Entrez:16940517

siRNA sequence "agggauaaugaaggcugcu" alignment with "Reovirus" virus reference Genome sequences
siRNA sequence matching with "agggauaaugaaggcugcu" Reovirus" Virus reference Genome sequences
Browse all the records for "Reovirus" virus
Browse "virsi2065 " record
Length: 19
GC Content:47 %
Strain of Virus: T3D
GenBank Acc: M27261
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "agggauaaugaaggcugcu" siRNA in Human Genome sequences
See M27261 at Genbank
Pubmed:16940517
Article:Gene-specific inhibition of reovirus replication by RNA interference.
Authors:Kobayashi T, Chappell JD, Danthi P, Dermody TS.
Journal:J Virol. 2006 Sep;80(18):9053-63.
Entrez:16940517

siRNA sequence "guuugccauaaagccaggu" alignment with "Reovirus" virus reference Genome sequences
siRNA sequence matching with "guuugccauaaagccaggu" Reovirus" Virus reference Genome sequences
Browse all the records for "Reovirus" virus
Browse "virsi2064 " record
Length: 19
GC Content:47 %
Strain of Virus: T3D
GenBank Acc: M27261
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "guuugccauaaagccaggu" siRNA in Human Genome sequences
See M27261 at Genbank
Pubmed:16940517
Article:Gene-specific inhibition of reovirus replication by RNA interference.
Authors:Kobayashi T, Chappell JD, Danthi P, Dermody TS.
Journal:J Virol. 2006 Sep;80(18):9053-63.
Entrez:16940517


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1436	gcagcugccaaaugucaaa	Reovirus	mu-NS	293T	Protein	99	16940517	Blast SL	refseqs
virsi1434	gucagcucaaucauguagc	Reovirus	mu-NS	293T	Protein	80	16940517	Blast SL	refseqs
virsi1435	gaugaauugcuugacgcug	Reovirus	mu-NS	293T	Protein	76	16940517	Blast SL	refseqs
virsi1432	auguggaauuggacgcguu	Reovirus	mu-NS	293T	Protein	64	16940517	Blast SL	refseqs
virsi2066	agcagucgggauugauacu	Reovirus	mu-NS	293T	Protein	32	16940517	Blast SL	refseqs
virsi2065	agggauaaugaaggcugcu	Reovirus	mu-NS	293T	Protein	21	16940517	Blast SL	refseqs
virsi2064	guuugccauaaagccaggu	Reovirus	mu-NS	293T	Protein	11	16940517	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm