VIRsiRNAdb

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Total number of Results for 15985182 are 16
Results from 0 - 25

siRNA sequence "gugucaaggaggaucgacu" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "gugucaaggaggaucgacu" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1101 " record
Length: 19
GC Content:53 %
Starting position: 4823
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "gugucaaggaggaucgacu" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "guggaagucaucacgaagc" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "guggaagucaucacgaagc" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1104 " record
Length: 19
GC Content:53 %
Starting position: 6349
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "guggaagucaucacgaagc" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "gaacaaacaaacagcgaugaa" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "gaacaaacaaacagcgaugaa" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1097 " record
Length: 21
GC Content:38 %
Starting position: 312
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "gaacaaacaaacagcgaugaa" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "gggcaguucugggugaagu" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "gggcaguucugggugaagu" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1098 " record
Length: 19
GC Content:58 %
Starting position: 3110
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "gggcaguucugggugaagu" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "cuacggucacccugaguga" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "cuacggucacccugaguga" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1099 " record
Length: 19
GC Content:58 %
Starting position: 3317
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "cuacggucacccugaguga" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "gaggagcaagucugcuaugc" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "gaggagcaagucugcuaugc" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1100 " record
Length: 20
GC Content:55 %
Starting position: 4119
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "gaggagcaagucugcuaugc" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "gacggugaugugauugggcu" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "gacggugaugugauugggcu" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1102 " record
Length: 20
GC Content:55 %
Starting position: 5039
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "gacggugaugugauugggcu" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "gcagcaagagguuacauuu" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "gcagcaagagguuacauuu" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1103 " record
Length: 19
GC Content:42 %
Starting position: 5497
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "gcagcaagagguuacauuu" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "caacgagauggguuggcua" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "caacgagauggguuggcua" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1105 " record
Length: 19
GC Content:53 %
Starting position: 6915
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "caacgagauggguuggcua" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "gaagaacgcuguaguggau" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "gaagaacgcuguaguggau" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1106 " record
Length: 19
GC Content:47 %
Starting position: 7353
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "gaagaacgcuguaguggau" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "ggacgcaccuugggagaggu" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "ggacgcaccuugggagaggu" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1107 " record
Length: 20
GC Content:65 %
Starting position: 7693
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "ggacgcaccuugggagaggu" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "ggucaacagcaaugcagcu" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "ggucaacagcaaugcagcu" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1108 " record
Length: 19
GC Content:53 %
Starting position: 8892
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "ggucaacagcaaugcagcu" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "cagcaaugcagcuuugggu" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "cagcaaugcagcuuugggu" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1109 " record
Length: 19
GC Content:53 %
Starting position: 8898
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "cagcaaugcagcuuugggu" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "gaagcagagccauuugguu" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "gaagcagagccauuugguu" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1110 " record
Length: 19
GC Content:47 %
Starting position: 9095
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "gaagcagagccauuugguu" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "gggaaaggacccaaaguca" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "gggaaaggacccaaaguca" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1111 " record
Length: 19
GC Content:53 %
Starting position: 9607
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "gggaaaggacccaaaguca" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "gagagauaugaagacacaac" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "gagagauaugaagacacaac" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1112 " record
Length: 20
GC Content:40 %
Starting position: 10335
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "gagagauaugaagacacaac" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1101	gugucaaggaggaucgacu	West Nile Virus [WNV]	NS3	Huh-7 .5	Protein	Medium	15985182	Blast SL	refseqs
virsi1104	guggaagucaucacgaagc	West Nile Virus [WNV]	NS4B	Huh-7 .5	Protein	Medium	15985182	Blast SL	refseqs
virsi1097	gaacaaacaaacagcgaugaa	West Nile Virus [WNV]	C	Huh-7 .5	Protein	Medium	15985182	Blast SL	refseqs
virsi1098	gggcaguucugggugaagu	West Nile Virus [WNV]	NS1	Huh-7 .5	Protein	Low	15985182	Blast SL	refseqs
virsi1099	cuacggucacccugaguga	West Nile Virus [WNV]	NS1	Huh-7 .5	Protein	Low	15985182	Blast SL	refseqs
virsi1100	gaggagcaagucugcuaugc	West Nile Virus [WNV]	NS2A	Huh-7 .5	Protein	Low	15985182	Blast SL	refseqs
virsi1102	gacggugaugugauugggcu	West Nile Virus [WNV]	NS4B	Huh-7 .5	Protein	Low	15985182	Blast SL	refseqs
virsi1103	gcagcaagagguuacauuu	West Nile Virus [WNV]	NS4B	Huh-7 .5	Protein	Low	15985182	Blast SL	refseqs
virsi1105	caacgagauggguuggcua	West Nile Virus [WNV]	NS4B	Huh-7 .5	Protein	Low	15985182	Blast SL	refseqs
virsi1106	gaagaacgcuguaguggau	West Nile Virus [WNV]	NS5	Huh-7 .5	Protein	Low	15985182	Blast SL	refseqs
virsi1107	ggacgcaccuugggagaggu	West Nile Virus [WNV]	NS5	Huh-7 .5	Protein	Low	15985182	Blast SL	refseqs
virsi1108	ggucaacagcaaugcagcu	West Nile Virus [WNV]	NS5	Huh-7 .5	Protein	Low	15985182	Blast SL	refseqs
virsi1109	cagcaaugcagcuuugggu	West Nile Virus [WNV]	NS5	Huh-7 .5	Protein	Low	15985182	Blast SL	refseqs
virsi1110	gaagcagagccauuugguu	West Nile Virus [WNV]	NS5	Huh-7 .5	Protein	Low	15985182	Blast SL	refseqs
virsi1111	gggaaaggacccaaaguca	West Nile Virus [WNV]	NS5	Huh-7 .5	Protein	Low	15985182	Blast SL	refseqs
virsi1112	gagagauaugaagacacaac	West Nile Virus [WNV]	NS5	Huh-7 .5	Protein	Low	15985182	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm