VIRsiRNAdb

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Total number of Results for 20534349 are 7
Results from 0 - 25

siRNA sequence "ucacccaaauguacaccaaug" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "ucacccaaauguacaccaaug" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1982 " record
Length: 21
GC Content:43 %
Starting position: 2027
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48

Offtargets for "ucacccaaauguacaccaaug" siRNA in Human Genome sequences
See AJ242654 at Genbank
Pubmed:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349

siRNA sequence "ggucucguagaccgugcac" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "ggucucguagaccgugcac" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1981 " record
Length: 19
GC Content:63 %
Starting position: 322
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48

Offtargets for "ggucucguagaccgugcac" siRNA in Human Genome sequences
See AJ242654 at Genbank
Pubmed:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349

siRNA sequence "cauacccuccuguuuaacauc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "cauacccuccuguuuaacauc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1983 " record
Length: 21
GC Content:43 %
Starting position: 4150
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48

Offtargets for "cauacccuccuguuuaacauc" siRNA in Human Genome sequences
See AJ242654 at Genbank
Pubmed:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349

siRNA sequence "ugcacgguguugacugauuuc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "ugcacgguguugacugauuuc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1984 " record
Length: 21
GC Content:48 %
Starting position: 4690
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48

Offtargets for "ugcacgguguugacugauuuc" siRNA in Human Genome sequences
See AJ242654 at Genbank
Pubmed:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349

siRNA sequence "gacacugagacaccaauugac" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "gacacugagacaccaauugac" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1985 " record
Length: 21
GC Content:48 %
Starting position: 6379
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48

Offtargets for "gacacugagacaccaauugac" siRNA in Human Genome sequences
See AJ242654 at Genbank
Pubmed:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349

siRNA sequence "ggaugauccugaugacucauu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "ggaugauccugaugacucauu" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1986 " record
Length: 21
GC Content:43 %
Starting position: 7259
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48

Offtargets for "ggaugauccugaugacucauu" siRNA in Human Genome sequences
See AJ242654 at Genbank
Pubmed:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349

siRNA sequence "uguggugccuacuccuacuuu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "uguggugccuacuccuacuuu" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1987 " record
Length: 21
GC Content:48 %
Starting position: 7712
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48

Offtargets for "uguggugccuacuccuacuuu" siRNA in Human Genome sequences
See AJ242654 at Genbank
Pubmed:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1982	ucacccaaauguacaccaaug	Hepatitis C Virus [HCV]	NS3	Huh-7	RNA	Medium	20534349	Blast SL	refseqs
virsi1981	ggucucguagaccgugcac	Hepatitis C Virus [HCV]	IRES	Huh-7	RNA	Low	20534349	Blast SL	refseqs
virsi1983	cauacccuccuguuuaacauc	Hepatitis C Virus [HCV]	NS4B	Huh-7	RNA	Low	20534349	Blast SL	refseqs
virsi1984	ugcacgguguugacugauuuc	Hepatitis C Virus [HCV]	NS5A	Huh-7	RNA	Low	20534349	Blast SL	refseqs
virsi1985	gacacugagacaccaauugac	Hepatitis C Virus [HCV]	NS5B	Huh-7	RNA	Low	20534349	Blast SL	refseqs
virsi1986	ggaugauccugaugacucauu	Hepatitis C Virus [HCV]	NS5B	Huh-7	RNA	Low	20534349	Blast SL	refseqs
virsi1987	uguggugccuacuccuacuuu	Hepatitis C Virus [HCV]	NS5B	Huh-7	RNA	Low	20534349	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm