VIRsiRNAdb

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• VsiRNAid

Total number of Results for Henipavirus are 8
Results from 0 - 25

siRNA sequence "aauuagcguuagguagaguaauauacg" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aauuagcguuagguagaguaauauacg" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1929 " record
Length: 27
GC Content:33 %
Starting position: 15030
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aauuagcguuagguagaguaauauacg" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "aaaccuucuuguaacaucuuauaugau" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aaaccuucuuguaacaucuuauaugau" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1930 " record
Length: 27
GC Content:26 %
Starting position: 16286
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aaaccuucuuguaacaucuuauaugau" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "aaagaaguacuaucagauugaccaacc" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aaagaaguacuaucagauugaccaacc" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1931 " record
Length: 27
GC Content:37 %
Starting position: 17609
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aaagaaguacuaucagauugaccaacc" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "aaacauggacuauagcaacuauccccu" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aaacauggacuauagcaacuauccccu" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1932 " record
Length: 27
GC Content:41 %
Starting position: 13822
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aaacauggacuauagcaacuauccccu" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "aauaucaaucgugguuaucuu" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aauaucaaucgugguuaucuu" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1934 " record
Length: 21
GC Content:29 %
Starting position: 1157
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aauaucaaucgugguuaucuu" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "aauguucaggcuagagaggca" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aauguucaggcuagagaggca" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1936 " record
Length: 21
GC Content:48 %
Starting position: 1331
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aauguucaggcuagagaggca" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "aaagagagucaauccguucuu" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aaagagagucaauccguucuu" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1933 " record
Length: 21
GC Content:38 %
Starting position: 712
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aaagagagucaauccguucuu" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "aaauaaucucagacaucggaa" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aaauaaucucagacaucggaa" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1935 " record
Length: 21
GC Content:33 %
Starting position: 861
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aaauaaucucagacaucggaa" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1929	aauuagcguuagguagaguaauauacg	Henipavirus	L	BHK-21	Cell Count	Low	18687361	Blast SL	refseqs
virsi1930	aaaccuucuuguaacaucuuauaugau	Henipavirus	L	BHK-21	Cell Count	Low	18687361	Blast SL	refseqs
virsi1931	aaagaaguacuaucagauugaccaacc	Henipavirus	L	BHK-21	Cell Count	Low	18687361	Blast SL	refseqs
virsi1932	aaacauggacuauagcaacuauccccu	Henipavirus	L	BHK-21	Cell Count	Low	18687361	Blast SL	refseqs
virsi1934	aauaucaaucgugguuaucuu	Henipavirus	N	BHK-21	Cell Count	High	18687361	Blast SL	refseqs
virsi1936	aauguucaggcuagagaggca	Henipavirus	N	BHK-21	Cell Count	High	18687361	Blast SL	refseqs
virsi1933	aaagagagucaauccguucuu	Henipavirus	N	BHK-21	Cell Count	60	18687361	Blast SL	refseqs
virsi1935	aaauaaucucagacaucggaa	Henipavirus	N	BHK-21	Cell Count	20	18687361	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm