VIRsiRNAdb

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Total number of Results for 18687361 are 10
Results from 0 - 25

siRNA sequence "aacaugcaggcaagagaagcc" alignment with "Hendra Virus" virus reference Genome sequences
siRNA sequence matching with "aacaugcaggcaagagaagcc" Hendra Virus" Virus reference Genome sequences
Browse all the records for "Hendra Virus" virus
Browse "virsi1937 " record
Length: 21
GC Content:52 %
Starting position: 1331
Strain of Virus: Hev
GenBank Acc: AF017149
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aacaugcaggcaagagaagcc" siRNA in Human Genome sequences
See AF017149 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "aaagagggucaauccauucuu" alignment with "Hendra Virus" virus reference Genome sequences
siRNA sequence matching with "aaagagggucaauccauucuu" Hendra Virus" Virus reference Genome sequences
Browse all the records for "Hendra Virus" virus
Browse "virsi1938 " record
Length: 21
GC Content:38 %
Starting position: 712
Strain of Virus: Hev
GenBank Acc: AF017149
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aaagagggucaauccauucuu" siRNA in Human Genome sequences
See AF017149 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "aauuagcguuagguagaguaauauacg" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aauuagcguuagguagaguaauauacg" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1929 " record
Length: 27
GC Content:33 %
Starting position: 15030
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aauuagcguuagguagaguaauauacg" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "aaaccuucuuguaacaucuuauaugau" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aaaccuucuuguaacaucuuauaugau" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1930 " record
Length: 27
GC Content:26 %
Starting position: 16286
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aaaccuucuuguaacaucuuauaugau" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "aaagaaguacuaucagauugaccaacc" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aaagaaguacuaucagauugaccaacc" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1931 " record
Length: 27
GC Content:37 %
Starting position: 17609
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aaagaaguacuaucagauugaccaacc" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "aaacauggacuauagcaacuauccccu" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aaacauggacuauagcaacuauccccu" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1932 " record
Length: 27
GC Content:41 %
Starting position: 13822
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aaacauggacuauagcaacuauccccu" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "aauaucaaucgugguuaucuu" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aauaucaaucgugguuaucuu" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1934 " record
Length: 21
GC Content:29 %
Starting position: 1157
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aauaucaaucgugguuaucuu" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "aauguucaggcuagagaggca" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aauguucaggcuagagaggca" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1936 " record
Length: 21
GC Content:48 %
Starting position: 1331
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aauguucaggcuagagaggca" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "aaagagagucaauccguucuu" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aaagagagucaauccguucuu" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1933 " record
Length: 21
GC Content:38 %
Starting position: 712
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aaagagagucaauccguucuu" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361

siRNA sequence "aaauaaucucagacaucggaa" alignment with "Henipavirus" virus reference Genome sequences
siRNA sequence matching with "aaauaaucucagacaucggaa" Henipavirus" Virus reference Genome sequences
Browse all the records for "Henipavirus" virus
Browse "virsi1935 " record
Length: 21
GC Content:33 %
Starting position: 861
Strain of Virus: Niv
GenBank Acc: AJ564622
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aaauaaucucagacaucggaa" siRNA in Human Genome sequences
See AJ564622 at Genbank
Pubmed:18687361
Article:Inhibition of Henipavirus infection by RNA interference.
Authors:Mungall BA, Schopman NC, Lambeth LS, Doran TJ.
Journal:Antiviral Res. 2008 Dec;80(3):324-31. Epub 2008 Aug 5.
Entrez:18687361


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1937	aacaugcaggcaagagaagcc	Hendra Virus	N	BHK-21	Cell Count	Medium	18687361	Blast SL	refseqs
virsi1938	aaagagggucaauccauucuu	Hendra Virus	N	BHK-21	Cell Count	Low	18687361	Blast SL	refseqs
virsi1929	aauuagcguuagguagaguaauauacg	Henipavirus	L	BHK-21	Cell Count	Low	18687361	Blast SL	refseqs
virsi1930	aaaccuucuuguaacaucuuauaugau	Henipavirus	L	BHK-21	Cell Count	Low	18687361	Blast SL	refseqs
virsi1931	aaagaaguacuaucagauugaccaacc	Henipavirus	L	BHK-21	Cell Count	Low	18687361	Blast SL	refseqs
virsi1932	aaacauggacuauagcaacuauccccu	Henipavirus	L	BHK-21	Cell Count	Low	18687361	Blast SL	refseqs
virsi1934	aauaucaaucgugguuaucuu	Henipavirus	N	BHK-21	Cell Count	High	18687361	Blast SL	refseqs
virsi1936	aauguucaggcuagagaggca	Henipavirus	N	BHK-21	Cell Count	High	18687361	Blast SL	refseqs
virsi1933	aaagagagucaauccguucuu	Henipavirus	N	BHK-21	Cell Count	60	18687361	Blast SL	refseqs
virsi1935	aaauaaucucagacaucggaa	Henipavirus	N	BHK-21	Cell Count	20	18687361	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm