VIRsiRNAdb

siRNA sequence "ucacccaaauguacaccaaug" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ucacccaaauguacaccaaug" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1982 " record
Length: 21
GC Content:43 %
Starting position: 2027
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48

Offtargets for "ucacccaaauguacaccaaug" siRNA in Human Genome sequences

See AJ242654 at Genbank

Pubmed:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349

siRNA sequence "cucguccccuccggccguacc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "cucguccccuccggccguacc" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2148 " record
Length: 21
GC Content:76 %
GenBank Acc: nM_031836
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "cucguccccuccggccguacc" siRNA in Human Genome sequences

See nM_031836 at Genbank

Pubmed:12594341
Article:RNA interference blocks gene expression and RNA synthesis from hepatitis C replicons propagated in human liver cells.
Authors:Wilson JA, Jayasena S, Khvorova A, Sabatinos S, Rodrigue-Gervais IG, Arya S, Sarangi F, Harris-Brandts M, Beaulieu S, Richardson CD.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2783-8. Epub 2003 Feb 19.
Entrez:12594341

siRNA sequence "ggucucguagaccgugcac" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ggucucguagaccgugcac" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1981 " record
Length: 19
GC Content:63 %
Starting position: 322
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48

Offtargets for "ggucucguagaccgugcac" siRNA in Human Genome sequences

See AJ242654 at Genbank

Pubmed:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349

siRNA sequence "cauacccuccuguuuaacauc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "cauacccuccuguuuaacauc" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1983 " record
Length: 21
GC Content:43 %
Starting position: 4150
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48

Offtargets for "cauacccuccuguuuaacauc" siRNA in Human Genome sequences

See AJ242654 at Genbank

Pubmed:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349

siRNA sequence "ugcacgguguugacugauuuc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ugcacgguguugacugauuuc" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1984 " record
Length: 21
GC Content:48 %
Starting position: 4690
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48

Offtargets for "ugcacgguguugacugauuuc" siRNA in Human Genome sequences

See AJ242654 at Genbank

Pubmed:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349

siRNA sequence "gacacugagacaccaauugac" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "gacacugagacaccaauugac" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1985 " record
Length: 21
GC Content:48 %
Starting position: 6379
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48

Offtargets for "gacacugagacaccaauugac" siRNA in Human Genome sequences

See AJ242654 at Genbank

Pubmed:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349

siRNA sequence "ggaugauccugaugacucauu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ggaugauccugaugacucauu" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1986 " record
Length: 21
GC Content:43 %
Starting position: 7259
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48

Offtargets for "ggaugauccugaugacucauu" siRNA in Human Genome sequences

See AJ242654 at Genbank

Pubmed:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349

siRNA sequence "uguggugccuacuccuacuuu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "uguggugccuacuccuacuuu" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1987 " record
Length: 21
GC Content:48 %
Starting position: 7712
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48

Offtargets for "uguggugccuacuccuacuuu" siRNA in Human Genome sequences

See AJ242654 at Genbank

Pubmed:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349

siRNA sequence "ggccuugugguacugccug" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ggccuugugguacugccug" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2156 " record
Length: 19
GC Content:63 %
GenBank Acc: NC_004102
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggccuugugguacugccug" siRNA in Human Genome sequences

See NC_004102 at Genbank

Pubmed:12740604
Article:Inhibition of intracellular hepatitis C virus replication by synthetic and vector-derived small interfering RNAs.
Authors:Yokota T, Sakamoto N, Enomoto N, Tanabe Y, Miyagishi M, Maekawa S, Yi L, Kurosaki M, Taira K, Watanabe M, Mizusawa H.
Journal:EMBO Rep. 2003 Jun;4(6):602-8.
Entrez:12740604

siRNA sequence "gggcagaacugcggcuaucgc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "gggcagaacugcggcuaucgc" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2152 " record
Length: 21
GC Content:67 %
GenBank Acc: nM_012526
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "gggcagaacugcggcuaucgc" siRNA in Human Genome sequences

See nM_012526 at Genbank

Pubmed:12594341
Article:RNA interference blocks gene expression and RNA synthesis from hepatitis C replicons propagated in human liver cells.
Authors:Wilson JA, Jayasena S, Khvorova A, Sabatinos S, Rodrigue-Gervais IG, Arya S, Sarangi F, Harris-Brandts M, Beaulieu S, Richardson CD.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2783-8. Epub 2003 Feb 19.
Entrez:12594341

siRNA sequence "gcgucuagccauggcguua" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "gcgucuagccauggcguua" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2154 " record
Length: 19
GC Content:58 %
GenBank Acc: NC_004102
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gcgucuagccauggcguua" siRNA in Human Genome sequences

See NC_004102 at Genbank

Pubmed:12740604
Article:Inhibition of intracellular hepatitis C virus replication by synthetic and vector-derived small interfering RNAs.
Authors:Yokota T, Sakamoto N, Enomoto N, Tanabe Y, Miyagishi M, Maekawa S, Yi L, Kurosaki M, Taira K, Watanabe M, Mizusawa H.
Journal:EMBO Rep. 2003 Jun;4(6):602-8.
Entrez:12740604

siRNA sequence "ggacgaccggguccuuucu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ggacgaccggguccuuucu" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2155 " record
Length: 19
GC Content:63 %
GenBank Acc: NC_004102
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggacgaccggguccuuucu" siRNA in Human Genome sequences

See NC_004102 at Genbank

Pubmed:12740604
Article:Inhibition of intracellular hepatitis C virus replication by synthetic and vector-derived small interfering RNAs.
Authors:Yokota T, Sakamoto N, Enomoto N, Tanabe Y, Miyagishi M, Maekawa S, Yi L, Kurosaki M, Taira K, Watanabe M, Mizusawa H.
Journal:EMBO Rep. 2003 Jun;4(6):602-8.
Entrez:12740604

siRNA sequence "ggucucguagaccgugcac" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ggucucguagaccgugcac" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2157 " record
Length: 19
GC Content:63 %
GenBank Acc: NC_004102
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggucucguagaccgugcac" siRNA in Human Genome sequences

See NC_004102 at Genbank

Pubmed:12740604
Article:Inhibition of intracellular hepatitis C virus replication by synthetic and vector-derived small interfering RNAs.
Authors:Yokota T, Sakamoto N, Enomoto N, Tanabe Y, Miyagishi M, Maekawa S, Yi L, Kurosaki M, Taira K, Watanabe M, Mizusawa H.
Journal:EMBO Rep. 2003 Jun;4(6):602-8.
Entrez:12740604

siRNA sequence "gacacugagacaccaauugac" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

Sorry unable to load image

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2354 " record
Length: 21
GC Content:48 %
Starting position: 7982
GenBank Acc: HQ908359
Transfection Reagent: Electroporation

Offtargets for "gacacugagacaccaauugac" siRNA in Human Genome sequences

See HQ908359 at Genbank

Pubmed:15890944
Article:Hepatitis C virus replicons escape RNA interference induced by a short interfering RNA directed against the NS5b coding region.
Authors:Wilson JA, Richardson CD.
Journal:J Virol. 2005 Jun;79(11):7050-8.
Entrez:15890944

siRNA sequence "gacacugagacaccaauugac" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

Sorry unable to load image

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi3001 " record
Length: 21
GC Content:48 %
Starting position: 7982
GenBank Acc: HQ908359
Transfection Reagent: Electroporation

Offtargets for "gacacugagacaccaauugac" siRNA in Human Genome sequences

See HQ908359 at Genbank

Pubmed:15890944
Article:Hepatitis C virus replicons escape RNA interference induced by a short interfering RNA directed against the NS5b coding region.
Authors:Wilson JA, Richardson CD.
Journal:J Virol. 2005 Jun;79(11):7050-8.
Entrez:15890944

siRNA sequence "cugguucggcuguacaugg" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "cugguucggcuguacaugg" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1399 " record
Length: 21
GC Content:52 %
GenBank Acc: AY587299
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "cugguucggcuguacaugg" siRNA in Human Genome sequences

See AY587299 at Genbank

Pubmed:16960393
Article:RNA interference effectively inhibits mRNA accumulation and protein expression of hepatitis C virus core and E2 genes in human cells.
Authors:Liu M, Ding H, Zhao P, Qin ZL, Gao J, Cao MM, Luan J, Wu WB, Qi ZT.
Journal:Biosci Biotechnol Biochem. 2006 Sep;70(9):2049-55. Epub 2006 Sep 7.
Entrez:16960393

siRNA sequence "uccagcuugugaauaccaa" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "uccagcuugugaauaccaa" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1402 " record
Length: 21
GC Content:38 %
GenBank Acc: AY587299
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "uccagcuugugaauaccaa" siRNA in Human Genome sequences

See AY587299 at Genbank

Pubmed:16960393
Article:RNA interference effectively inhibits mRNA accumulation and protein expression of hepatitis C virus core and E2 genes in human cells.
Authors:Liu M, Ding H, Zhao P, Qin ZL, Gao J, Cao MM, Luan J, Wu WB, Qi ZT.
Journal:Biosci Biotechnol Biochem. 2006 Sep;70(9):2049-55. Epub 2006 Sep 7.
Entrez:16960393

siRNA sequence "gggggggaggcaccucauuuu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "gggggggaggcaccucauuuu" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2149 " record
Length: 21
GC Content:62 %
GenBank Acc: nM_002229
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "gggggggaggcaccucauuuu" siRNA in Human Genome sequences

See nM_002229 at Genbank

Pubmed:12594341
Article:RNA interference blocks gene expression and RNA synthesis from hepatitis C replicons propagated in human liver cells.
Authors:Wilson JA, Jayasena S, Khvorova A, Sabatinos S, Rodrigue-Gervais IG, Arya S, Sarangi F, Harris-Brandts M, Beaulieu S, Richardson CD.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2783-8. Epub 2003 Feb 19.
Entrez:12594341

siRNA sequence "ggagaugaaggcgaaggcguc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ggagaugaaggcgaaggcguc" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2150 " record
Length: 21
GC Content:62 %
GenBank Acc: nM_005922
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "ggagaugaaggcgaaggcguc" siRNA in Human Genome sequences

See nM_005922 at Genbank

Pubmed:12594341
Article:RNA interference blocks gene expression and RNA synthesis from hepatitis C replicons propagated in human liver cells.
Authors:Wilson JA, Jayasena S, Khvorova A, Sabatinos S, Rodrigue-Gervais IG, Arya S, Sarangi F, Harris-Brandts M, Beaulieu S, Richardson CD.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2783-8. Epub 2003 Feb 19.
Entrez:12594341

siRNA sequence "gacacugagacaccaauugac" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "gacacugagacaccaauugac" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2151 " record
Length: 21
GC Content:48 %
GenBank Acc: nM_021655
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "gacacugagacaccaauugac" siRNA in Human Genome sequences

See nM_021655 at Genbank

Pubmed:12594341
Article:RNA interference blocks gene expression and RNA synthesis from hepatitis C replicons propagated in human liver cells.
Authors:Wilson JA, Jayasena S, Khvorova A, Sabatinos S, Rodrigue-Gervais IG, Arya S, Sarangi F, Harris-Brandts M, Beaulieu S, Richardson CD.
Journal:Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2783-8. Epub 2003 Feb 19.
Entrez:12594341

siRNA sequence "cccgcucaaugcccg/cga" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "cccgcucaaugcccg/cga" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1024 " record
Length: 19
GC Content:68 %
GenBank Acc: AY661552
Transfection Reagent: siPORT Amine/Lipid
Incubation Time (Hours):96

Offtargets for "cccgcucaaugcccg/cga" siRNA in Human Genome sequences

See AY661552 at Genbank

Pubmed:19173711
Article:Consensus siRNA for inhibition of HCV genotype-4 replication.
Authors:Zekri AR, Bahnassy AA, El-Din HM, Salama HM.
Journal:Virol J. 2009 Jan 27;6:13.
Entrez:19173711

siRNA sequence "auuugggcgugcccccgca" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "auuugggcgugcccccgca" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1025 " record
Length: 19
GC Content:68 %
GenBank Acc: AY661552
Transfection Reagent: siPORT Amine/Lipid
Incubation Time (Hours):96

Offtargets for "auuugggcgugcccccgca" siRNA in Human Genome sequences

See AY661552 at Genbank

Pubmed:19173711
Article:Consensus siRNA for inhibition of HCV genotype-4 replication.
Authors:Zekri AR, Bahnassy AA, El-Din HM, Salama HM.
Journal:Virol J. 2009 Jan 27;6:13.
Entrez:19173711

siRNA sequence "gacacugagacaccaauugac" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "gacacugagacaccaauugac" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1183 " record
Length: 21
GC Content:48 %
Starting position: 6367

Offtargets for "gacacugagacaccaauugac" siRNA in Human Genome sequences

See at Genbank

Pubmed:16872906
Article:Simultaneous targeting of HCV replication and viral binding with a single lentiviral vector containing multiple RNA interference expression cassettes.
Authors:Henry SD, van der Wegen P, Metselaar HJ, Tilanus HW, Scholte BJ, van der Laan LJ.
Journal:Mol Ther. 2006 Oct;14(4):485-93. Epub 2006 Jul 26.
Entrez:16872906

siRNA sequence "ccagaauacgacuuggagc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ccagaauacgacuuggagc" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi1181 " record
Length: 19
GC Content:53 %
Starting position: 8666
Strain of Virus: Genotype 1a
Incubation Time (Hours):72

Offtargets for "ccagaauacgacuuggagc" siRNA in Human Genome sequences

See at Genbank

Pubmed:15977238
Article:Small interfering RNA effectively inhibits protein expression and negative strand RNA synthesis from a full-length hepatitis C virus clone.
Authors:Prabhu R, Vittal P, Yin Q, Flemington E, Garry R, Robichaux WH, Dash S.
Journal:J Med Virol. 2005 Aug;76(4):511-9.
Entrez:15977238

siRNA sequence "ggcugaucaacaccaacggca" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences

siRNA sequence matching with "ggcugaucaacaccaacggca" Hepatitis C Virus [HCV]" Virus reference Genome sequences

Browse all the records for "Hepatitis C Virus [HCV]" virus

Browse "virsi2276 " record
Length: 21
GC Content:57 %
Strain of Virus: 1a
GenBank Acc: M62321
Incubation Time (Hours):48

Offtargets for "ggcugaucaacaccaacggca" siRNA in Human Genome sequences

See M62321 at Genbank

Pubmed:21535893
Article:Inhibition of full length hepatitis C virus particles of 1a genotype through small interference RNA.
Authors:Ansar M, Ashfaq UA, Shahid I, Sarwar MT, Javed T, Rehman S, Hassan S, Riazuddin S.
Journal:Virol J. 2011 May 2;8:203.
Entrez:21535893

VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With
virsi1982	ucacccaaauguacaccaaug	Hepatitis C Virus [HCV]	NS3	Huh-7	RNA	Medium	20534349	Blast SL	refseqs
virsi2148	cucguccccuccggccguacc	Hepatitis C Virus [HCV]	NS3	Huh-7	Protein	Medium	12594341	Blast SL	refseqs
virsi1981	ggucucguagaccgugcac	Hepatitis C Virus [HCV]	IRES	Huh-7	RNA	Low	20534349	Blast SL	refseqs
virsi1983	cauacccuccuguuuaacauc	Hepatitis C Virus [HCV]	NS4B	Huh-7	RNA	Low	20534349	Blast SL	refseqs
virsi1984	ugcacgguguugacugauuuc	Hepatitis C Virus [HCV]	NS5A	Huh-7	RNA	Low	20534349	Blast SL	refseqs
virsi1985	gacacugagacaccaauugac	Hepatitis C Virus [HCV]	NS5B	Huh-7	RNA	Low	20534349	Blast SL	refseqs
virsi1986	ggaugauccugaugacucauu	Hepatitis C Virus [HCV]	NS5B	Huh-7	RNA	Low	20534349	Blast SL	refseqs
virsi1987	uguggugccuacuccuacuuu	Hepatitis C Virus [HCV]	NS5B	Huh-7	RNA	Low	20534349	Blast SL	refseqs
virsi2156	ggccuugugguacugccug	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	Low	12740604	Blast SL	refseqs
virsi2152	gggcagaacugcggcuaucgc	Hepatitis C Virus [HCV]	NS5B	Huh-7	Protein	Low	12594341	Blast SL	refseqs
virsi2154	gcgucuagccauggcguua	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	High	12740604	Blast SL	refseqs
virsi2155	ggacgaccggguccuuucu	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	High	12740604	Blast SL	refseqs
virsi2157	ggucucguagaccgugcac	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	High	12740604	Blast SL	refseqs
virsi2354	gacacugagacaccaauugac	Hepatitis C Virus [HCV]	NS5B	Huh-7	Protein	High	15890944	Blast SL	refseqs
virsi3001	gacacugagacaccaauugac	Hepatitis C Virus [HCV]	NS5B	Huh-7	Protein	High	15890944	Blast SL	refseqs
virsi1399	cugguucggcuguacaugg	Hepatitis C Virus [HCV]	E2	HEK 293T	Protein	High	16960393	Blast SL	refseqs
virsi1402	uccagcuugugaauaccaa	Hepatitis C Virus [HCV]	E2	HEK 293T	Protein	High	16960393	Blast SL	refseqs
virsi2149	gggggggaggcaccucauuuu	Hepatitis C Virus [HCV]	NS3	Huh-7	Protein	High	12594341	Blast SL	refseqs
virsi2150	ggagaugaaggcgaaggcguc	Hepatitis C Virus [HCV]	NS5B	Huh-7	mRNA	High	12594341	Blast SL	refseqs
virsi2151	gacacugagacaccaauugac	Hepatitis C Virus [HCV]	NS5B	Ab12-A2	Protein	High	12594341	Blast SL	refseqs
virsi1024	cccgcucaaugcccg/cga	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	100	19173711	Blast SL	refseqs
virsi1025	auuugggcgugcccccgca	Hepatitis C Virus [HCV]	5'UTR	Huh-7	Protein	100	19173711	Blast SL	refseqs
virsi1183	gacacugagacaccaauugac	Hepatitis C Virus [HCV]	NS5B	Huh-7	RNA	98	16872906	Blast SL	refseqs
virsi1181	ccagaauacgacuuggagc	Hepatitis C Virus [HCV]	NS5B	Huh-7	RNA	96	15977238	Blast SL	refseqs
virsi2276	ggcugaucaacaccaacggca	Hepatitis C Virus [HCV]	E	Huh-7	mRNA	93	21535893	Blast SL	refseqs

VIRsiRNAdb

Database of Viral siRNA / shRNA

Browse BY