VIRsiRNAdb

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• VsiRNAid

Total number of Results for Togaviridae are 16
Results from 0 - 25

siRNA sequence "aauggccggaguccuuuaaga" alignment with "Chikungunya Virus" virus reference Genome sequences
siRNA sequence matching with "aauggccggaguccuuuaaga" Chikungunya Virus" Virus reference Genome sequences
Browse all the records for "Chikungunya Virus" virus
Browse "virsi2271 " record
Length: 21
GC Content:48 %
Starting position: 4194
Strain of Virus: DRDE-06
GenBank Acc: EF210157
Transfection Reagent: siPORT

Offtargets for "aauggccggaguccuuuaaga" siRNA in Human Genome sequences
See EF210157 at Genbank
Pubmed:18805396
Article:RNA interference mediated inhibition of Chikungunya virus replication in mammalian cells.
Authors:Dash PK, Tiwari M, Santhosh SR, Parida M, Lakshmana Rao PV.
Journal:Biochem Biophys Res Commun. 2008 Nov 28;376(4):718-22. Epub 2008 Sep 19.
Entrez:18805396

siRNA sequence "aacacggugggaguaccguau" alignment with "Chikungunya Virus" virus reference Genome sequences
siRNA sequence matching with "aacacggugggaguaccguau" Chikungunya Virus" Virus reference Genome sequences
Browse all the records for "Chikungunya Virus" virus
Browse "virsi2270 " record
Length: 21
GC Content:52 %
Starting position: 10018
Strain of Virus: DRDE-06
GenBank Acc: EF210157
Transfection Reagent: siPORT

Offtargets for "aacacggugggaguaccguau" siRNA in Human Genome sequences
See EF210157 at Genbank
Pubmed:18805396
Article:RNA interference mediated inhibition of Chikungunya virus replication in mammalian cells.
Authors:Dash PK, Tiwari M, Santhosh SR, Parida M, Lakshmana Rao PV.
Journal:Biochem Biophys Res Commun. 2008 Nov 28;376(4):718-22. Epub 2008 Sep 19.
Entrez:18805396

siRNA sequence "ucgcagaaagaaaaauccaac" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "ucgcagaaagaaaaauccaac" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2313 " record
Length: 21
GC Content:38 %
Strain of Virus: SFV8
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ucgcagaaagaaaaauccaac" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029

siRNA sequence "cgguuaaaggcaguaggguug" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "cgguuaaaggcaguaggguug" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2314 " record
Length: 21
GC Content:52 %
Strain of Virus: SFV9
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "cgguuaaaggcaguaggguug" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029

siRNA sequence "gagggauuccuagugugcaag" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "gagggauuccuagugugcaag" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2309 " record
Length: 21
GC Content:52 %
Strain of Virus: SFV4
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "gagggauuccuagugugcaag" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029

siRNA sequence "guuuauuaacacuguuuugaa" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "guuuauuaacacuguuuugaa" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2316 " record
Length: 21
GC Content:24 %
Strain of Virus: SFV11
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "guuuauuaacacuguuuugaa" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029

siRNA sequence "gacucgucuuccacugccagc" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "gacucgucuuccacugccagc" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2315 " record
Length: 21
GC Content:62 %
Strain of Virus: SFV10
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "gacucgucuuccacugccagc" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029

siRNA sequence "ugccgaacguggugggguucc" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "ugccgaacguggugggguucc" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2319 " record
Length: 21
GC Content:67 %
Strain of Virus: SFV14
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ugccgaacguggugggguucc" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029

siRNA sequence "ucgcuugccauuccgguacuc" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "ucgcuugccauuccgguacuc" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2312 " record
Length: 21
GC Content:57 %
Strain of Virus: SFV7
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ucgcuugccauuccgguacuc" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029

siRNA sequence "uccgggaucaggcaagucugc" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "uccgggaucaggcaagucugc" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2311 " record
Length: 21
GC Content:62 %
Strain of Virus: SFV6
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "uccgggaucaggcaagucugc" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029

siRNA sequence "aggcguacgucgaucgaucgg" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "aggcguacgucgaucgaucgg" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2320 " record
Length: 21
GC Content:62 %
Strain of Virus: SFV15
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aggcguacgucgaucgaucgg" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029

siRNA sequence "caaaucaaaacgaacccuguc" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "caaaucaaaacgaacccuguc" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2322 " record
Length: 21
GC Content:43 %
Strain of Virus: SFV17
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "caaaucaaaacgaacccuguc" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029

siRNA sequence "acgaccuguacgcgaacacgg" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "acgaccuguacgcgaacacgg" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2321 " record
Length: 21
GC Content:62 %
Strain of Virus: SFV16
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "acgaccuguacgcgaacacgg" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029

siRNA sequence "ugggcgagggaauacaaggca" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "ugggcgagggaauacaaggca" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2310 " record
Length: 21
GC Content:57 %
Strain of Virus: SFV5
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ugggcgagggaauacaaggca" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029

siRNA sequence "uggcgagggacauuaaggcgu" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "uggcgagggacauuaaggcgu" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2317 " record
Length: 21
GC Content:57 %
Strain of Virus: SFV12
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "uggcgagggacauuaaggcgu" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029

siRNA sequence "cgaggauaacguggauaggcc" alignment with "Semliki Forest Virus" virus reference Genome sequences
siRNA sequence matching with "cgaggauaacguggauaggcc" Semliki Forest Virus" Virus reference Genome sequences
Browse all the records for "Semliki Forest Virus" virus
Browse "virsi2318 " record
Length: 21
GC Content:57 %
Strain of Virus: SFV13
GenBank Acc: AJ251359
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "cgaggauaacguggauaggcc" siRNA in Human Genome sequences
See AJ251359 at Genbank
Pubmed:21191029
Article:Antiviral RNA interference responses induced by Semliki Forest virus infection of mosquito cells: characterization, origin, and frequency-dependent functions of virus-derived small interfering RNAs.
Authors:Siu RW, Fragkoudis R, Simmonds P, Donald CL, Chase-Topping ME, Barry G, Attarzadeh-Yazdi G, Rodriguez-Andres J, Nash AA, Merits A, Fazakerley JK, Kohl A.
Journal:J Virol. 2011 Mar;85(6):2907-17. Epub 2010 Dec 29.
Entrez:21191029


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi2271	aauggccggaguccuuuaaga	Chikungunya Virus	NSP3	Vero	Viral Titer	100	18805396	Blast SL	refseqs
virsi2270	aacacggugggaguaccguau	Chikungunya Virus	E1	Vero	Viral Titer	96	18805396	Blast SL	refseqs
virsi2313	ucgcagaaagaaaaauccaac	Semliki Forest Virus	NSP	U4.4	Protein	79	21191029	Blast SL	refseqs
virsi2314	cgguuaaaggcaguaggguug	Semliki Forest Virus	NSP	U4.4	Protein	79	21191029	Blast SL	refseqs
virsi2309	gagggauuccuagugugcaag	Semliki Forest Virus	NSP	U4.4	Protein	78	21191029	Blast SL	refseqs
virsi2316	guuuauuaacacuguuuugaa	Semliki Forest Virus	NSP	U4.4	Protein	75	21191029	Blast SL	refseqs
virsi2315	gacucgucuuccacugccagc	Semliki Forest Virus	NSP	U4.4	Protein	61	21191029	Blast SL	refseqs
virsi2319	ugccgaacguggugggguucc	Semliki Forest Virus	Polyprotein	U4.4	Protein	56	21191029	Blast SL	refseqs
virsi2312	ucgcuugccauuccgguacuc	Semliki Forest Virus	NSP	U4.4	Protein	48	21191029	Blast SL	refseqs
virsi2311	uccgggaucaggcaagucugc	Semliki Forest Virus	NSP	U4.4	Protein	40	21191029	Blast SL	refseqs
virsi2320	aggcguacgucgaucgaucgg	Semliki Forest Virus	Polyprotein	U4.4	Protein	38	21191029	Blast SL	refseqs
virsi2322	caaaucaaaacgaacccuguc	Semliki Forest Virus	Polyprotein	U4.4	Protein	18	21191029	Blast SL	refseqs
virsi2321	acgaccuguacgcgaacacgg	Semliki Forest Virus	Polyprotein	U4.4	Protein	10	21191029	Blast SL	refseqs
virsi2310	ugggcgagggaauacaaggca	Semliki Forest Virus	NSP	U4.4	Protein	8	21191029	Blast SL	refseqs
virsi2317	uggcgagggacauuaaggcgu	Semliki Forest Virus	Polyprotein	U4.4	Protein	6	21191029	Blast SL	refseqs
virsi2318	cgaggauaacguggauaggcc	Semliki Forest Virus	Polyprotein	U4.4	Protein	3	21191029	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm